View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037-Insertion-4 (Length: 611)
Name: NF3037-Insertion-4
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 535
Target Start/End: Complemental strand, 47028212 - 47027683
Alignment:
| Q |
6 |
caaaaatttgctgctccatctacaatcacaatcacagaagtagaaacttaccaactttaaagaagacaaaaatagtttatagttatttaatttaatacat |
105 |
Q |
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| T |
47028212 |
caaaaatttgctgctccatctacaatcaca------gaagtagaaacttaccaactttaaagaagacaaaaatagtttatagttatttaatttaatacat |
47028119 |
T |
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| Q |
106 |
atatgaaaggatcttcatctccttaccttaaagagtgtctcaaacttggttttcactaaggtatactcctgctttatgtcttgcaggcttttaaagcacc |
205 |
Q |
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| T |
47028118 |
atatgaaaggatcttcatctccttaccttaaagagtgtctcaaacttggttttcactaaggtatactcctgctttatgtcttgcaggcttttaaagcacc |
47028019 |
T |
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| Q |
206 |
tgaaatgcnnnnnnnnnnnnnncatgtatattttttcctatcagaatatgaacattgtattgccaaagagttttcaaaacatacagaaaattagacatga |
305 |
Q |
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| T |
47028018 |
tgaaatgcaacaaaaaaaaaa-catgtatattttttcctatcagaatatgaacattgtattgccaaagagttttcaaaacataaagaaaattagacatga |
47027920 |
T |
|
| Q |
306 |
tattttgaagcttacccttctatgtttttctcctcacagtagtttttgaaggcaatacagactctctgaactctctgcgcgccaatgctgtattttccaa |
405 |
Q |
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| T |
47027919 |
tattttgaagcttacccttctatgtttttctcctcacagtagtttttgaaggcaatacagactctctgaactctctgagcgccaatgctgtattttccaa |
47027820 |
T |
|
| Q |
406 |
taactcaacgacttatcaaaacagcatatacaa----tag---tttcttatcttgttttgaggaattaataagtgactttaatttgtatgatttcttatc |
498 |
Q |
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| T |
47027819 |
taactcaacgacttatcaaaa----ttatacaagttgtagaaacaacatatcttgttttgaggaattaataagtgagtttaatttgtatgatttcttatc |
47027724 |
T |
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| Q |
499 |
ttatttcaagaa----taaggaaaggtgaatcaatctttta |
535 |
Q |
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| T |
47027723 |
ttatttcaagaataattaaggaaaggtgaatcaatctttta |
47027683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 535 - 611
Target Start/End: Complemental strand, 47027655 - 47027579
Alignment:
| Q |
535 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgtta |
611 |
Q |
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| T |
47027655 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgtta |
47027579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 36582466 - 36582527
Alignment:
| Q |
546 |
tattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaat |
607 |
Q |
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| T |
36582466 |
tattacctggagctgctacctttcaattggtgaacatgagcatccattctcttaaaatcaat |
36582527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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