View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037-Insertion-5 (Length: 540)
Name: NF3037-Insertion-5
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 21833110 - 21832797
Alignment:
| Q |
8 |
ggattgagga-agtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgt |
106 |
Q |
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| T |
21833110 |
ggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgt |
21833011 |
T |
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| Q |
107 |
cgtcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatatgaatgtgttgttgtaaccatggttttgcgaagtcgtgaaaa |
206 |
Q |
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| T |
21833010 |
cctcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatttgaatgtgttgttgtaaccatggttttgcgaagtcgtgaaaa |
21832911 |
T |
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| Q |
207 |
ctgtagagactgtgaacacaaaaagacggtaacgttggtgcaaaaatggtgctgggggtgacacaaaaatattagggtttggagttaggttatgttttta |
306 |
Q |
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| T |
21832910 |
ctgcagaaaccgtgaacacaaaaagacggtaacgttagtgcaaaaatggtgctggcggtgacacaaaaatattagggtttggagttaggttatgttttta |
21832811 |
T |
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| Q |
307 |
ttgttacgggtttg |
320 |
Q |
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| T |
21832810 |
ttgttacgggtttg |
21832797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 326 - 421
Target Start/End: Complemental strand, 21832497 - 21832402
Alignment:
| Q |
326 |
ggtaacggatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
421 |
Q |
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| T |
21832497 |
ggtaacagatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
21832402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 478 - 540
Target Start/End: Complemental strand, 21832347 - 21832286
Alignment:
| Q |
478 |
acataaaattcaacttcattcaattagggaaatggattatcggcaacacttatttctccacac |
540 |
Q |
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| T |
21832347 |
acataaaattcaacttcattcaatt-gggaaatggattatcggcaacacttatttctccacac |
21832286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 45055858 - 45055773
Alignment:
| Q |
44 |
tgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaag |
129 |
Q |
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| T |
45055858 |
tgatggagaggaagtgtttggagacgagggagagagactctaagtagggactattgttgttgtagtcatcgatgaggaatttgaag |
45055773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 6433175 - 6433220
Alignment:
| Q |
120 |
gaatttgaagatgcatttccaacagtcatcaggtaagtatgaatat |
165 |
Q |
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| T |
6433175 |
gaatctgaagatgcattcccaacagtcatcaggtaaatttgaatat |
6433220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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