View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037-Insertion-7 (Length: 208)
Name: NF3037-Insertion-7
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 3523008 - 3523129
Alignment:
| Q |
7 |
aggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtcttatagtcgatggaagatgaagtcatgaaccttctgatttg |
106 |
Q |
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| T |
3523008 |
aggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtcttatagtcgatgaaagatgaagtcatgaaccttctgatttg |
3523107 |
T |
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| Q |
107 |
agaaccgaactagtttttgatg |
128 |
Q |
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| T |
3523108 |
agaaccgaactagtttttgatg |
3523129 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 3524357 - 3524419
Alignment:
| Q |
142 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3524357 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctct |
3524419 |
T |
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