View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037-Insertion-8 (Length: 215)

Name: NF3037-Insertion-8
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037-Insertion-8
NF3037-Insertion-8
[»] chr5 (3 HSPs)
chr5 (7-215)||(1586515-1586723)
chr5 (7-215)||(1580405-1580613)
chr5 (7-215)||(1604202-1604410)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 1586723 - 1586515
Alignment:
Q  7 atttgtgctaactcttgttcggtataaagctgaggtgaataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttcca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586723 atttgtgctaactcttgttcggtataaagctgaggtgaataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttcca 1586624  T
Q  107 ttgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586623 ttgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagc 1586524  T
Q  207 tttcttttt 215  Q
    |||||||||    
T  1586523 tttcttttt 1586515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 1580613 - 1580405
Alignment:
Q  7 atttgtgctaactcttgttcggtataaagctgaggtgaataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttcca 106  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580613 atttgtgctaaatctttttcggtataaagctgaggtgcataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttcca 1580514  T
Q  107 ttgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580513 ttgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagc 1580414  T
Q  207 tttcttttt 215  Q
    |||||||||    
T  1580413 tttcttttt 1580405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 1604202 - 1604410
Alignment:
Q  7 atttgtgctaactcttgttcggtataaagctgaggtgaataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttcca 106  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604202 atttgtgctaaatctttttcggtataaagctgaggtgcataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttcca 1604301  T
Q  107 ttgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604302 ttgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagc 1604401  T
Q  207 tttcttttt 215  Q
    |||||||||    
T  1604402 tttcttttt 1604410  T

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