View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-10 (Length: 910)
Name: NF3037R-Insertion-10
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 5439518 - 5439131
Alignment:
| Q |
8 |
aataacattcatacatttcctttacaatcaaaataaattccattacattccacaaaagcatnnnnnnntctgagttacggtgaaatttcaagaggcctgc |
107 |
Q |
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| T |
5439518 |
aataacattcatacatttcctttacaatcaaaataaagtccattacattccacaaaagcataaaaaaatctgagttacggtgaaatttcaagaggcctgc |
5439419 |
T |
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| Q |
108 |
tcgagaagaatagcataaacaatatctaggttttcaatttaaaatgaaacttgtatatttagttaaagatatttaagtaatatagttaatttattaataa |
207 |
Q |
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| T |
5439418 |
tcgagaagaatagcataaacaatatctaggttttcaatttaaaatgaaacttgtatatttagttaaagatatttaagcaatatagttaatttattaataa |
5439319 |
T |
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| Q |
208 |
gtacgtatttcatatatactatcgttaaatgtacattcatacatccattatgtaaggagtatgaatatatgttaggatacatatcccgtgtatgtaacta |
307 |
Q |
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| T |
5439318 |
atacgaatttcatatatactatcgttaaatctatattcatacatccattacataaggagcacgaatatatgttaggatacatatcccgtgtatgtaacta |
5439219 |
T |
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| Q |
308 |
caaannnnnnnactatccttacatatatcaaatctaacaatgttgatattatcggttgtgtgagacatataataatattatttttttctt |
397 |
Q |
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| T |
5439218 |
c-aagttttttactatccttacatatatcaaatctaacaatgttgatattat-ggttgtgtgagacatataataatattatttttttctt |
5439131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 662 - 910
Target Start/End: Complemental strand, 5438866 - 5438618
Alignment:
| Q |
662 |
acagcgcaactgaagcaatttcaagggcagaaatcgaacgaattctcttcgccgtcgtcgatgggggcacaaacggctcctcctcctccgccgccgctac |
761 |
Q |
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| T |
5438866 |
acagcgcaactgaagcaatttcaagggcagaaatcgaacgagttctcttcgcagtcgtcgatgggggcacaaacggctcctcctcc---gccgccgctac |
5438770 |
T |
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| Q |
762 |
ctaaggaaccctttattaagcgctacaagttcgtttttcctgtgcttttggctggtgttggaggtaatttttctaaatccccaaaagct-aaaattag-t |
859 |
Q |
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| T |
5438769 |
ctaaggaaccctttattaagcactacaagttcttttttcctgtgcttttggctggtgttggaggtaatttttctaaatccccaaaagctaaaaattagtt |
5438670 |
T |
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| Q |
860 |
ttttaggttagg-ttttagtcattttttatgattggtgagtttgtgaaatgg |
910 |
Q |
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| T |
5438669 |
ttttaggttaggtttttagtcattttttatgattggtgagtttgtgaaatgg |
5438618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 471 - 587
Target Start/End: Complemental strand, 5439056 - 5438940
Alignment:
| Q |
471 |
tgcaagacaagtagagtgtgatcagagttagggtaaaagtgaataaaagaatgagtgaaggtggtgctgatcacggttcttctccaaagctttataatca |
570 |
Q |
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| T |
5439056 |
tgcaagacaagtagagtgtgatctgagttagggtaaaagtgaataaaagaatgagtgaaggtggtgctgatcacggttcttctccaaagctttataatca |
5438957 |
T |
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| Q |
571 |
caaacccaaaatatgta |
587 |
Q |
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| T |
5438956 |
caaacccaaaatatgta |
5438940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 662 - 815
Target Start/End: Complemental strand, 5432382 - 5432226
Alignment:
| Q |
662 |
acagcgcaactgaagcaatttcaagggca---gaaatcgaacgaattctcttcgccgtcgtcgatgggggcacaaacggctcctcctcctccgccgccgc |
758 |
Q |
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| T |
5432382 |
acagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgccgc |
5432283 |
T |
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| Q |
759 |
tacctaaggaaccctttattaagcgctacaagttcgtttttcctgtgcttttggctg |
815 |
Q |
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| T |
5432282 |
tgcctaaggaacccttcattaagcgctacaagttcgtttggcctatgctattggctg |
5432226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 587
Target Start/End: Complemental strand, 5432558 - 5432463
Alignment:
| Q |
498 |
ttagggtaaaagtgaataaaagaatgagtgaaggtg------gtgctgatcacggttcttctccaaagctttataatcacaaacccaaaatatgta |
587 |
Q |
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| T |
5432558 |
ttagggtaaaagtgaagaaaagaatgagtgaaggtggtggtagtgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgta |
5432463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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