View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037R-Insertion-12 (Length: 950)

Name: NF3037R-Insertion-12
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037R-Insertion-12
NF3037R-Insertion-12
[»] chr3 (5 HSPs)
chr3 (9-901)||(3364332-3365226)
chr3 (272-312)||(20874451-20874491)
chr3 (158-226)||(46568043-46568111)
chr3 (910-950)||(3364248-3364289)
chr3 (156-221)||(36820244-36820309)
[»] chr8 (6 HSPs)
chr8 (156-226)||(16252862-16252932)
chr8 (141-221)||(32043522-32043602)
chr8 (156-227)||(36069569-36069640)
chr8 (141-223)||(16351320-16351402)
chr8 (156-226)||(30748386-30748456)
chr8 (26-75)||(9969276-9969325)
[»] chr5 (7 HSPs)
chr5 (159-226)||(6368213-6368280)
chr5 (25-99)||(7359413-7359489)
chr5 (156-223)||(32516488-32516555)
chr5 (272-310)||(4855594-4855632)
chr5 (158-224)||(5305545-5305611)
chr5 (156-226)||(33006589-33006659)
chr5 (272-313)||(14257343-14257384)
[»] chr2 (2 HSPs)
chr2 (159-226)||(9556656-9556723)
chr2 (156-226)||(18188710-18188779)
[»] chr1 (8 HSPs)
chr1 (156-227)||(14226112-14226183)
chr1 (46-127)||(29807891-29807974)
chr1 (158-226)||(52442791-52442859)
chr1 (272-311)||(29665898-29665937)
chr1 (25-99)||(10569220-10569296)
chr1 (158-227)||(17815401-17815469)
chr1 (273-310)||(28467461-28467498)
chr1 (277-310)||(35666980-35667013)
[»] chr7 (7 HSPs)
chr7 (272-309)||(2221847-2221884)
chr7 (141-226)||(30200233-30200314)
chr7 (27-99)||(39812010-39812084)
chr7 (156-226)||(36514490-36514560)
chr7 (157-227)||(40139202-40139272)
chr7 (141-187)||(48202960-48203006)
chr7 (272-309)||(28702639-28702676)
[»] chr4 (5 HSPs)
chr4 (141-186)||(10775692-10775737)
chr4 (155-219)||(45185301-45185365)
chr4 (166-226)||(45423546-45423606)
chr4 (156-226)||(290078-290148)
chr4 (156-221)||(25257864-25257929)
[»] chr6 (1 HSPs)
chr6 (272-313)||(2785819-2785860)


Alignment Details
Target: chr3 (Bit Score: 677; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 9 - 901
Target Start/End: Complemental strand, 3365226 - 3364332
Alignment:
Q  9 gttcttggtctttctttgcctctagcgatttgattttcctccatctaatctattctctttactaca--gtctacatttcttctctctacatgctataatc 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  3365226 gttcttggtctttctttgcctctagcgatttgattatcctccatctaatctattctctttactacacagtctacatttcttctctctacatgctaaaatc 3365127  T
Q  107 atataagtctagtttctaccannnnnnnnaactgtaggtgttaccctaaaactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccac 206  Q
    |||||||||||||||||||||        ||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3365126 atataagtctagtttctaccattttttt-aactagaggtgttaccccaaaactctctccaatattgtcatttctaattctatgtcgtctaacctaaccac 3365028  T
Q  207 acatccgacacaacatcctcggttgacatccaatgtnnnnnnnnttcaaatctctctcacatgaattatgctatatgtgtttaattaagttgtttatcca 306  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3365027 acatccgacacaacatcctcggttgacatccaatgtaaaaaaatttcaaatctctctcacatgaattatgctatatgtgtttaattaagttgtttatcca 3364928  T
Q  307 aacaaagacaacttgataacaaatgcaaccataacaaattaaacaagagaaca-tataatatggctattcatcaaacagttggtgtgcgaccaatgatgc 405  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  3364927 aacaaagacaacttgataacaaatgcaaccataac-----aaacaagagaatattataatatggctattcatcaaacagttggtgtgcgaccaatgatgc 3364833  T
Q  406 cttcaaatttagttctttgtatatta----caaaaagtttatgtgagttgggttccggggctcaccacatcgtcaggttacagataacgctgaaaaatgt 501  Q
    |||||||||||||||||| |||||||     ||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||    
T  3364832 cttcaaatttagttctttttatattataattaaaaagtttatgtgagttgggctccggggctcaccacatcgccagggtacaaataacgctgaaaaatgt 3364733  T
Q  502 atttacagatcacccaccaaaaagttcctcgagttttttcagaaaattaaacagcacaaaaccaacacagcaagatttgaaattgaaaatgcacttaaaa 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364732 atttacagatcacccaccaaaaagttcctcgagttttttcagaaaattaaacagcacaaaaccaacacagcaagatttgaaattgaaaatgcacttaaaa 3364633  T
Q  602 ctagaaccgaaacagcatttgaaagagg-aaaatggagtttctaacctcttataaagaaattccaggtagaaggctgacgacagacggagcagcgacgga 700  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  3364632 ctagaaccgaaacagcatttgaaagaggaaaaatggagtttctaacctcttataaagaaattccaggtagaaggctgacgaaagacggagcagggacgga 3364533  T
Q  701 gaaaaggattggacgcagtgacgagaaagactttaggaatgagcaaagaaaaatacaagacactttgtgagctatttgaaaatataaaacacctttcaca 800  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364532 gaaaaggataggacgcagtgacgagaaagactttaggaatgagcaaagaaaaatacaagacactttgtgagctatttgaaaatataaaacacctttcaca 3364433  T
Q  801 tcgggtggaaacctacccgacatgaagttataaattannnnnnnnnnnnngaaccagagtttgtggctctttttggtgatgtgattttgatttataactt 900  Q
    |||||||||||||||||||||||||| ||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364432 tcgggtggaaacctacccgacatgaacttataaattatttttgtttttttgaaccagagtttgtggctctttttggtgatgtgattttgatttataactt 3364333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 20874451 - 20874491
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaacaaa 312  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  20874451 ttatgctataagtgcttaattaagttgtttatccaaacaaa 20874491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 46568111 - 46568043
Alignment:
Q  158 ctctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||| |||||||||||||||||||| || | |||||  || | ||||||||| |||||||||||||    
T  46568111 ctctctctaatgttgtcatttctaattcaatctggtctagtcttaacacacatccaacacaacatcctc 46568043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 910 - 950
Target Start/End: Complemental strand, 3364289 - 3364248
Alignment:
Q  910 aaatggaatttattaaa-ttgcaatgaatcttaacaagcaca 950  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  3364289 aaatggaatttattaaaattgcaatgaatcttaaccagcaca 3364248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 36820244 - 36820309
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaaca 221  Q
    ||||||||| ||||| |||||||||||| |||| |||||||  || ||||||||||| || |||||    
T  36820244 aactctctctaatgtcgtcatttctaatcctatctcgtctagtcttaccacacatccaacgcaaca 36820309  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 16252932 - 16252862
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||||| ||||||||||||||||||| ||| || ||||| || ||||||||||| |||||||||||||    
T  16252932 aactctctctaatgttgtcatttctaattttatctcatctaatcttaccacacatccaacacaacatcctc 16252862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 32043602 - 32043522
Alignment:
Q  141 taggtgttaccctaaaactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaaca 221  Q
    |||||| ||||| ||  ||||||| |||||||||||||||||||||||  ||||||  || ||||||||||| || |||||    
T  32043602 taggtgataccccaactctctctctaatgttgtcatttctaattctatcccgtctagtcttaccacacatccaacgcaaca 32043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 36069640 - 36069569
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctcg 227  Q
    ||||||||| ||||||||| ||||||||  |||  ||||||  || ||||||||||| ||||||||||||||    
T  36069640 aactctctctaatgttgtcgtttctaatcttatcccgtctagtcttaccacacatccaacacaacatcctcg 36069569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 16351402 - 16351320
Alignment:
Q  141 taggtgttaccctaaaactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatc 223  Q
    |||||| ||||||||  ||||||| ||||||||||||||||| |||||  ||||||  || |||||| |||| || |||||||    
T  16351402 taggtgctaccctaattctctctctaatgttgtcatttctaactctattccgtctagtcttaccacatatccaacgcaacatc 16351320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 30748456 - 30748386
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||||  |||||||||||||||||| ||||   |||||| |||||||||||||| ||  |||||||||    
T  30748456 aactctctgtaatgttgtcatttctaatcctatcatgtctaatctaaccacacatccaacgaaacatcctc 30748386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 9969276 - 9969325
Alignment:
Q  26 gcctctagcgatttgattttcctccatctaatctattctctttactacag 75  Q
    |||||||||||||||| | || ||||||||||||| ||||| ||||||||    
T  9969276 gcctctagcgatttgactatcatccatctaatctactctctctactacag 9969325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 6368213 - 6368280
Alignment:
Q  159 tctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||| |||||||||||||||||||||||| |||||||  || ||||||||||  || ||||||||||    
T  6368213 tctcttcaatgttgtcatttctaattctatctcgtctattcttaccacacatctaacgcaacatcctc 6368280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 7359413 - 7359489
Alignment:
Q  25 tgcctctagcgatttgattttcctccatctaatctattctctttactacag--tctacatttcttctctctacatgc 99  Q
    ||||||||| ||| ||| | |||||||||| ||||| |||| |||||||||  ||||||| ||||||||||||||||    
T  7359413 tgcctctagtgatatgactatcctccatctgatctactctccttactacagaatctacatatcttctctctacatgc 7359489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 32516555 - 32516488
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatc 223  Q
    ||||||||| ||||||||||||||||| |||||   |||||  || ||||||||||| ||||||||||    
T  32516555 aactctctctaatgttgtcatttctaagtctatcctgtctagtcttaccacacatccaacacaacatc 32516488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 4855632 - 4855594
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaaca 310  Q
    |||||||||| || |||||||||||||||||||||||||    
T  4855632 ttatgctataagtatttaattaagttgtttatccaaaca 4855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 5305611 - 5305545
Alignment:
Q  158 ctctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcc 224  Q
    ||||||| |||||||| |||||||||||||| | |||||  || ||||||||||| || ||||||||    
T  5305611 ctctctctaatgttgttatttctaattctatcttgtctagtcttaccacacatccaacgcaacatcc 5305545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 33006659 - 33006589
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||| || |  |||||| | |||||||||||||    
T  33006659 aactctctctaatgttgtcatttttaattttatctcgtctaatcttagaacacattcaacacaacatcctc 33006589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 14257384 - 14257343
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaacaaag 313  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  14257384 ttatgttataagtgcttaattaagttgtttatccaaacaaag 14257343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 9556656 - 9556723
Alignment:
Q  159 tctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    |||||| ||||||||||||||||||  |||  ||||||| || ||||||||||| |||||||||||||    
T  9556656 tctctctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacatcctc 9556723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 18188779 - 18188710
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||||||||||||||||||||| ||  |||  |||||| ||| | ||||||||| |||||||||||||    
T  18188779 aactctctccaatgttgtcatttctgatcatatcccgtctagcctta-cacacatccaacacaacatcctc 18188710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 14226112 - 14226183
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctcg 227  Q
    ||||||||||||||||| |||||||||| ||||   ||||| ||| ||||||||||| |||||| |||||||    
T  14226112 aactctctccaatgttgccatttctaatcctatcatgtctagccttaccacacatccaacacaaaatcctcg 14226183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 29807974 - 29807891
Alignment:
Q  46 cctccatctaatctattctctttactacag--tctacatttcttctctctacatgctataatcatataagtctagtttctacca 127  Q
    ||||||| ||||||| |||||||||||||   || |||| ||||||||||||||||   |||||  ||||||||||||||||||    
T  29807974 cctccatttaatctactctctttactacataatccacatgtcttctctctacatgcccaaatcacgtaagtctagtttctacca 29807891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 52442791 - 52442859
Alignment:
Q  158 ctctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    |||||||||||||| |||||||||||  ||| | |||||  || ||||||||||| |||||||||||||    
T  52442791 ctctctccaatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaacatcctc 52442859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 29665898 - 29665937
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaacaa 311  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  29665898 ttatgctataagtgtttaattaagctgtttatccaaacaa 29665937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 10569220 - 10569296
Alignment:
Q  25 tgcctctagcgatttgattttcctccatctaatctattctctttactacag--tctacatttcttctctctacatgc 99  Q
    ||||||||| |||||||||  |||||||||||||||  |||  ||||||||  ||||||  ||||||||||||||||    
T  10569220 tgcctctagtgatttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgc 10569296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 17815469 - 17815401
Alignment:
Q  158 ctctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctcg 227  Q
    ||||||| ||| |||||||||||||| ||||  ||||||  ||| |||||||||| ||||||||||||||    
T  17815469 ctctctctaatattgtcatttctaatgctatcccgtctagtcta-ccacacatccaacacaacatcctcg 17815401  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 28467461 - 28467498
Alignment:
Q  273 tatgctatatgtgtttaattaagttgtttatccaaaca 310  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  28467461 tatgctatatgcgtttaattaagttgtttatcccaaca 28467498  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 35666980 - 35667013
Alignment:
Q  277 ctatatgtgtttaattaagttgtttatccaaaca 310  Q
    ||||| ||||||||||||||||||||||||||||    
T  35666980 ctataagtgtttaattaagttgtttatccaaaca 35667013  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 2221884 - 2221847
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaac 309  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2221884 ttatgctataagtgtttaattaagttgtttatccaaac 2221847  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 30200233 - 30200314
Alignment:
Q  141 taggtgttaccctaaaactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    |||||||||||||||    ||||| ||||||||||||||||||  |||  | ||||| || ||||||||||| |||||||||||||    
T  30200233 taggtgttaccctaa----ctctctaatgttgtcatttctaatcatatcccatctaatcttaccacacatccaacacaacatcctc 30200314  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 39812084 - 39812010
Alignment:
Q  27 cctctagcgatttgattttcctccatctaatctattctctttactacag--tctacatttcttctctctacatgc 99  Q
    ||||||| ||||||  |||||||||||| ||||| |||| |||||| ||  ||||||| ||||||||||||||||    
T  39812084 cctctagtgatttggctttcctccatctgatctactctccttactatagaatctacatctcttctctctacatgc 39812010  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 36514490 - 36514560
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||||| ||||||||| |||||||||||||  ||| ||  || ||||||||||| || ||||||||||    
T  36514490 aactctctctaatgttgtcctttctaattctatcccgtttagtcttaccacacatccaacgcaacatcctc 36514560  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 40139202 - 40139272
Alignment:
Q  157 actctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctcg 227  Q
    |||||||| ||||||||| ||||||||  |||  ||||||  || ||||||||||| ||||||||||||||    
T  40139202 actctctctaatgttgtcttttctaatcttatcccgtctagtcttaccacacatcccacacaacatcctcg 40139272  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 48202960 - 48203006
Alignment:
Q  141 taggtgttaccctaaaactctctccaatgttgtcatttctaattcta 187  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||||||    
T  48202960 taggtgttaccccaactctctctctaatgttgtcatttctaattcta 48203006  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 28702676 - 28702639
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaac 309  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  28702676 ttatgctataagtgcttaattaagttgtttatccaaac 28702639  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 10775692 - 10775737
Alignment:
Q  141 taggtgttaccctaaaactctctccaatgttgtcatttctaattct 186  Q
    |||||||||||| || |||||||| |||||||||||||||||||||    
T  10775692 taggtgttaccccaacactctctctaatgttgtcatttctaattct 10775737  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 45185301 - 45185365
Alignment:
Q  155 aaactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaa 219  Q
    |||||||||| ||||||||||||||||||||||| || ||||  || || |||||||| ||||||    
T  45185301 aaactctctctaatgttgtcatttctaattctatctcatctagtcttactacacatccaacacaa 45185365  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 45423606 - 45423546
Alignment:
Q  166 aatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    |||||||||||||||||||||||  ||||||  || |||||||| || |||||||||||||    
T  45423606 aatgttgtcatttctaattctatcccgtctagtcttaccacacaaccaacacaacatcctc 45423546  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 290078 - 290148
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaacatcctc 226  Q
    ||||||||||||||||||||||| ||||| ||| |||||||| |  | |||||||   |||||||||||||    
T  290078 aactctctccaatgttgtcatttttaattttatctcgtctaatcgtatcacacattaaacacaacatcctc 290148  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 25257864 - 25257929
Alignment:
Q  156 aactctctccaatgttgtcatttctaattctatgtcgtctaacctaaccacacatccgacacaaca 221  Q
    ||||||||| |||||||||||||||||||||||   |||||  || || |||||||| ||||||||    
T  25257864 aactctctctaatgttgtcatttctaattctatcatgtctagtcttactacacatccaacacaaca 25257929  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 2785819 - 2785860
Alignment:
Q  272 ttatgctatatgtgtttaattaagttgtttatccaaacaaag 313  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  2785819 ttatgctataagcgattaattaagttgtttatccaaacaaag 2785860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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