View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-14 (Length: 1005)
Name: NF3037R-Insertion-14
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-14 |
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Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 851
Target Start/End: Complemental strand, 9669405 - 9668558
Alignment:
| Q |
8 |
atggcacatatgacggatttcatggcggatgagatgag---acttgtgttgaatgtttggactggttagaggaacaaacagatgtggtctttgcaattga |
104 |
Q |
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| T |
9669405 |
atggcacatatgatggatttcatggcggatgagatgaggagacttgtgttgaatgtttggactggttagaggaacaaacagatggggtctttgcaattga |
9669306 |
T |
|
| Q |
105 |
ataaggttatcaatgtagaaggttctttattttttatgtcattacatagtggttacttgaatactaatttgaactcgagctcttttcctctgttaacatg |
204 |
Q |
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| T |
9669305 |
ataaggttatcaatgtagaaggtcctttattttttatgtcattacatagctgttacttgaatactaatttgaactcaagctcttttcctctgttaacatg |
9669206 |
T |
|
| Q |
205 |
aaaacttcattctattttgttcattttaaaatatactaatataaccttaaga------------aacaagagaaagggaaacaaaaggagtttataatca |
292 |
Q |
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| T |
9669205 |
aaaacttcattctattttgttcattttaaaatatactaatataaccttaagacaatcagcaagaaacaagagaaagggaaacaaaaggagtttataatca |
9669106 |
T |
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| Q |
293 |
ccattcagttcctctctccttttccttttttcatcaaaactaaatcatgtgaaacttggattatgttaaaatatataggaacaaggaagcttcttcgaat |
392 |
Q |
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| T |
9669105 |
ccattcatttcctcaca---------tgtgccagaaaaaaaaaatcatgtgaaacttggattatgttaaaatatataggaacaaggaagcttcttcgaat |
9669015 |
T |
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| Q |
393 |
ctaaaaccttaacaaattctgacatgttcaaaataagagataatttttgcgggtaaagaactagacctctctaagttctaaaaccaaatgcaccccattt |
492 |
Q |
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| T |
9669014 |
ctaaaatctcaacaaattctcacatgttcaaaataagagataatttttgggggtaaagaactagacctctctaagttctaaaaccaaatgcaccccgttt |
9668915 |
T |
|
| Q |
493 |
ccttcttgcttctttcttcatctttaaggagtttgaatctataaggttttcaagagatgttccctttctacttcgaactcttccagcttctttcaaaagc |
592 |
Q |
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| T |
9668914 |
ccttcttgcttctttcttcatctttaaggagtttgaatctataaggttttcaagagatgttccctttctacttcgaactctgccggcttctttcaaaagc |
9668815 |
T |
|
| Q |
593 |
tcaaacagtcttttcttttcatcatcaacatctggatttgcagttcctagtttttcttctctcattttgagtatgtattccaatatctgaatggcatctt |
692 |
Q |
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| T |
9668814 |
tcaaacagtcttttcttttcatcatcaacatctggatttgcagttccaagtttttcttctctcattttgagtatgtattccaatatctgaatggcatctt |
9668715 |
T |
|
| Q |
693 |
caactctgtacagaataacataaaagggaattattttcatccattgagaggccatcaaattatccttgcatttgcaaagacaacagaaagagaagaaacc |
792 |
Q |
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| T |
9668714 |
caactctgta-aaaataacattaaagagaattattttcatccaccgagaagcaatcaaactgtccatgtatttgc-aatacaacagaaagacgagaaacc |
9668617 |
T |
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| Q |
793 |
aaacaatgccaaagtgagcttgggacatgcatattgatataatgaaaaacaaattctag |
851 |
Q |
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| T |
9668616 |
aaacaatgtcaaagtgagcttgggacatgcataatgatataatgaaaaacaaatcctag |
9668558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 554 - 698
Target Start/End: Complemental strand, 9688569 - 9688428
Alignment:
| Q |
554 |
ccctttctacttcgaactcttccagcttctttcaaaagctcaaacagtcttttcttttcatcatcaacatctggatttgcagttcctagtttttcttctc |
653 |
Q |
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| T |
9688569 |
ccctttctactccgaactctttctgctt---tcaaaagttcaaatagtcttttcttttcatcatcaacatctggatttgccgttccatgtttttcttctc |
9688473 |
T |
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| Q |
654 |
tcattttgagtatgtattccaatatctgaatggcatcttcaactc |
698 |
Q |
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| T |
9688472 |
tcattttgagtatgtattccaatatttgaatggcatcttcaactc |
9688428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 253 - 427
Target Start/End: Complemental strand, 9674059 - 9673872
Alignment:
| Q |
253 |
aagaaacaagagaaagggaaacaaaaggagtttataatcaccattcagttcctctctccttttccttttttcatcaaaactaa---------------at |
337 |
Q |
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| T |
9674059 |
aagaaacaagagaaagggaaacaaaatgagtttataatcaccattcatttcccctctc--tctccttttttcatcaaaattaattcatgtgccagaaaat |
9673962 |
T |
|
| Q |
338 |
catgtgaaacttggattatgttaaaatatataggaacaaggaagcttcttcgaatctaaaaccttaacaaattctgacatgttcaaaata |
427 |
Q |
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| T |
9673961 |
catgtgaaacttggattatgttaaaatgtataggaaaaaggaggcttcttccaatctaaaaccttaacaaactcttacatgttcaaaata |
9673872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 9671415 - 9671339
Alignment:
| Q |
325 |
atcaaaactaaatcatgtgaaacttggattatgttaaaatatataggaacaaggaagcttcttcgaatctaaaacct |
401 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
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| T |
9671415 |
atcaaaattaaatcatgtgaaacttggattatgttaaaatatataggaacagggaggcttcttccaatctaaaacct |
9671339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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