View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3037R-Insertion-15 (Length: 1023)
Name: NF3037R-Insertion-15
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-15 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 442 - 1023
Target Start/End: Original strand, 52733736 - 52734325
Alignment:
| Q |
442 |
caacgcaacgcaacaagttgtgtgtgagttcaaagcgacgcgaccaaaataataat---gataaaaatattaaacttaacataa---cataa----ttat |
531 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
52733736 |
caacgcaacgcaacaagttttgtgtgagttcaaagcgacgcgaccaaaataataataatgataaaaatatttaacttaacataataacataacatattat |
52733835 |
T |
|
| Q |
532 |
catatcgcagctcttacaaaatagtatatctttctcttctccggcatagcagcaagcagcatatctgaaactcatttaatttacgtttccgttcaaatct |
631 |
Q |
| |
|
|||||||||||| |||||||||| | | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52733836 |
catatcgcagctattacaaaatatt---tgtttctcttctccggcatagca---agcagcatatctgaaactcaattaatttacgtttccgttcaaatct |
52733929 |
T |
|
| Q |
632 |
gaattgatttacgccagctcgctccagatcacaaccgtcaatgctccagttggactcgatctaggtttctcttctctatactttaatttacnnnnnnngt |
731 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
52733930 |
gaattgagttacgccagctcgctccagatcacaaccgtcaatgctccagttggactcgatctaggtttctct-----atactttaattta--atttttgt |
52734022 |
T |
|
| Q |
732 |
cggtcaatttccaagatctctctctaacctctgcatacttatcgtaatcaatggatctttattttcttattgcagatcgagttcattaatatca------ |
825 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52734023 |
cggtcaatttccaagatctct----aacctcttcatacttatcgtaatcaatggatctttattttcttattgcagatcgagttcattaatatcaatcata |
52734118 |
T |
|
| Q |
826 |
--ggatgcaaataccaacgaataatgggatgatagaatgcagtgtttgtcattcaaaattggtatcaccagctgcaacaaaaactgtatcaagggcttat |
923 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52734119 |
taggatgcaaataccaacgaataatgggatgatagaatgcagtgtctgtcattcaaaattggtatcaccagctgcaacaaaaactgtatcaagggcttat |
52734218 |
T |
|
| Q |
924 |
gatcgccacaaaaataggattacttcaaaacaacgtg-tcttaacatctggt---gtggt-gtgactgtatgcttgttggttt-cag-ctactctagtct |
1016 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
52734219 |
gatcgccacaaaaataggattacttcaaaacaacgtgttcttaacatcttgttggttggtggtgactgtatgcttgttggtttccagcctattctagtct |
52734318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 198 - 369
Target Start/End: Original strand, 52733487 - 52733657
Alignment:
| Q |
198 |
gaagtgagcgatgattgtattccaccaccgaaccaaaagcattgtgtgagtt-----tcaccaaacacaaagtagattaagtatagatagaagaaattca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52733487 |
gaagtgagcgatgattgtattccaccaccgaaccaaaagcattgtgtgagttttaccttaccaaacacaaagtagatt-agtatagatagaagaaattca |
52733585 |
T |
|
| Q |
293 |
ttcaggtttgactccactttactttactttgtttcatttctccttctcgcacctcattggtccatcacgtgtcatca |
369 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52733586 |
ttcaggtttgactcc-----actttactttgtttcatttctccatctcgcacctcattggtccatcacgtgtcatca |
52733657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 52733288 - 52733410
Alignment:
| Q |
10 |
aaatcactcgcattctattatttataactgaggtaaagtaaattagaaaattggtgcatgcaccccacagctgctcagatcagaagaagactgcaaaatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52733288 |
aaatcactcgcattctattatttataactgaggtaaagtaaattagaaaattggtgcatgcaccccacagctgctcagatcagaagaagactgcaaaatg |
52733387 |
T |
|
| Q |
110 |
aagtgaaagaaacgtgtaagctg |
132 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
52733388 |
aagtgaaagaaacgtgcaagctg |
52733410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University