View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037R-Insertion-16 (Length: 1030)

Name: NF3037R-Insertion-16
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037R-Insertion-16
NF3037R-Insertion-16
[»] chr5 (35 HSPs)
chr5 (8-576)||(3522450-3523014)
chr5 (592-687)||(20502141-20502236)
chr5 (595-687)||(33247294-33247386)
chr5 (595-687)||(38978796-38978888)
chr5 (864-974)||(3521427-3521544)
chr5 (595-687)||(29451947-29452038)
chr5 (792-864)||(3521574-3521648)
chr5 (595-687)||(5355605-5355697)
chr5 (595-687)||(7537075-7537167)
chr5 (595-687)||(32455143-32455233)
chr5 (595-687)||(29002744-29002836)
chr5 (595-687)||(29874319-29874411)
chr5 (455-565)||(26449072-26449190)
chr5 (603-687)||(9630245-9630329)
chr5 (595-687)||(24173422-24173514)
chr5 (599-687)||(27600812-27600900)
chr5 (607-687)||(35204977-35205057)
chr5 (607-687)||(35212102-35212182)
chr5 (595-645)||(30132884-30132934)
chr5 (595-687)||(13932515-13932607)
chr5 (607-687)||(33970671-33970751)
chr5 (588-655)||(8680627-8680694)
chr5 (595-658)||(73786-73849)
chr5 (591-669)||(5002138-5002216)
chr5 (645-687)||(19211334-19211376)
chr5 (597-658)||(13278969-13279030)
chr5 (595-664)||(13789734-13789803)
chr5 (595-667)||(10228141-10228213)
chr5 (595-669)||(29299429-29299504)
chr5 (595-665)||(1015158-1015228)
chr5 (597-687)||(11932024-11932114)
chr5 (595-665)||(22731261-22731331)
chr5 (595-632)||(30132844-30132881)
chr5 (595-668)||(33478180-33478253)
chr5 (514-551)||(39466671-39466708)
[»] chr4 (49 HSPs)
chr4 (592-687)||(54864118-54864213)
chr4 (592-687)||(43141765-43141860)
chr4 (595-687)||(33622882-33622974)
chr4 (595-687)||(25874754-25874846)
chr4 (595-687)||(33615833-33615925)
chr4 (595-687)||(36196367-36196459)
chr4 (595-687)||(37895257-37895349)
chr4 (599-687)||(50511251-50511339)
chr4 (595-687)||(35877368-35877460)
chr4 (595-687)||(52136701-52136793)
chr4 (600-685)||(8347498-8347584)
chr4 (595-687)||(28460800-28460892)
chr4 (595-687)||(32193477-32193569)
chr4 (607-687)||(40592726-40592806)
chr4 (595-687)||(43556693-43556785)
chr4 (601-687)||(35929064-35929149)
chr4 (595-687)||(29686402-29686494)
chr4 (595-687)||(1205136-1205228)
chr4 (595-676)||(38208314-38208395)
chr4 (599-683)||(7086189-7086273)
chr4 (595-687)||(25756714-25756806)
chr4 (595-687)||(56491074-56491166)
chr4 (592-687)||(27587245-27587340)
chr4 (602-687)||(31853121-31853206)
chr4 (596-664)||(1100899-1100967)
chr4 (595-687)||(4418151-4418243)
chr4 (596-675)||(50511391-50511470)
chr4 (603-670)||(54673381-54673448)
chr4 (597-687)||(42160027-42160117)
chr4 (597-678)||(19350616-19350696)
chr4 (595-668)||(30191969-30192042)
chr4 (599-687)||(22019940-22020028)
chr4 (607-687)||(52966409-52966489)
chr4 (597-668)||(48195963-48196034)
chr4 (637-687)||(50511471-50511521)
chr4 (622-683)||(1140923-1140984)
chr4 (464-566)||(26619934-26620044)
chr4 (595-656)||(29686485-29686546)
chr4 (595-668)||(48361125-48361198)
chr4 (617-687)||(52277989-52278061)
chr4 (595-658)||(24100761-24100824)
chr4 (595-658)||(25756795-25756858)
chr4 (595-665)||(43020831-43020901)
chr4 (595-665)||(47866111-47866181)
chr4 (595-668)||(19150796-19150869)
chr4 (589-670)||(34226383-34226464)
chr4 (512-565)||(34667161-34667214)
chr4 (595-668)||(36132637-36132710)
chr4 (595-668)||(44111747-44111820)
[»] chr8 (28 HSPs)
chr8 (595-687)||(35583937-35584029)
chr8 (597-687)||(29690490-29690580)
chr8 (595-687)||(13831877-13831969)
chr8 (595-685)||(34604837-34604927)
chr8 (595-687)||(7548499-7548591)
chr8 (595-687)||(45372759-45372851)
chr8 (607-687)||(44579907-44579987)
chr8 (595-687)||(43932051-43932143)
chr8 (464-571)||(32897622-32897737)
chr8 (602-687)||(43292622-43292707)
chr8 (595-687)||(9420589-9420681)
chr8 (595-687)||(43409836-43409928)
chr8 (597-687)||(40645714-40645804)
chr8 (595-669)||(45180111-45180185)
chr8 (598-687)||(34745311-34745400)
chr8 (595-658)||(34745259-34745322)
chr8 (595-658)||(43292570-43292633)
chr8 (595-658)||(43932132-43932195)
chr8 (595-670)||(9550111-9550186)
chr8 (602-685)||(24599725-24599808)
chr8 (601-687)||(9633135-9633221)
chr8 (595-665)||(12958851-12958921)
chr8 (595-665)||(22429610-22429680)
chr8 (609-687)||(38298517-38298595)
chr8 (595-665)||(44796417-44796487)
chr8 (597-658)||(5356876-5356937)
chr8 (601-658)||(9633089-9633146)
chr8 (599-668)||(10839836-10839904)
[»] chr1 (28 HSPs)
chr1 (592-687)||(45977093-45977188)
chr1 (595-687)||(13770763-13770855)
chr1 (594-687)||(15699518-15699611)
chr1 (599-687)||(19998465-19998553)
chr1 (595-687)||(27687843-27687935)
chr1 (599-687)||(44224323-44224411)
chr1 (597-687)||(29438192-29438282)
chr1 (595-687)||(51590484-51590576)
chr1 (595-687)||(52279236-52279328)
chr1 (597-687)||(52030872-52030962)
chr1 (595-687)||(13321768-13321860)
chr1 (603-687)||(31050304-31050388)
chr1 (599-687)||(34174892-34174980)
chr1 (595-687)||(13320305-13320397)
chr1 (514-574)||(42471273-42471333)
chr1 (595-687)||(48565581-48565673)
chr1 (595-668)||(26924286-26924359)
chr1 (595-683)||(18038746-18038834)
chr1 (595-687)||(22182767-22182859)
chr1 (592-668)||(26760172-26760248)
chr1 (592-668)||(44939065-44939141)
chr1 (597-687)||(37178964-37179054)
chr1 (596-668)||(34332549-34332621)
chr1 (597-668)||(49944906-49944977)
chr1 (595-658)||(51590432-51590495)
chr1 (595-668)||(519835-519908)
chr1 (595-668)||(18744629-18744701)
chr1 (595-687)||(29064149-29064243)
[»] chr7 (42 HSPs)
chr7 (595-687)||(41487845-41487937)
chr7 (598-687)||(22618217-22618306)
chr7 (599-687)||(41395668-41395756)
chr7 (607-687)||(45123299-45123379)
chr7 (595-687)||(47280176-47280267)
chr7 (599-687)||(47484027-47484115)
chr7 (592-687)||(7456418-7456513)
chr7 (595-680)||(27320355-27320440)
chr7 (595-683)||(40234768-40234856)
chr7 (592-687)||(10674177-10674272)
chr7 (599-687)||(18064776-18064864)
chr7 (595-687)||(47612344-47612436)
chr7 (602-687)||(37006465-37006550)
chr7 (595-687)||(24164570-24164662)
chr7 (597-687)||(45025648-45025738)
chr7 (595-656)||(24932454-24932515)
chr7 (597-686)||(33901093-33901182)
chr7 (592-687)||(41088906-41089001)
chr7 (597-687)||(29559441-29559531)
chr7 (605-687)||(33039572-33039654)
chr7 (595-668)||(28677319-28677392)
chr7 (595-668)||(36245378-36245451)
chr7 (599-683)||(3633197-3633281)
chr7 (592-656)||(13860302-13860366)
chr7 (603-687)||(39413882-39413966)
chr7 (592-687)||(14543322-14543417)
chr7 (645-687)||(12806962-12807004)
chr7 (592-658)||(24164515-24164581)
chr7 (464-510)||(42078145-42078191)
chr7 (611-668)||(8566099-8566156)
chr7 (610-668)||(2523787-2523845)
chr7 (595-665)||(4826837-4826907)
chr7 (610-668)||(6838448-6838506)
chr7 (595-665)||(28020003-28020073)
chr7 (611-665)||(32811396-32811450)
chr7 (601-687)||(40198658-40198744)
chr7 (599-669)||(41850668-41850738)
chr7 (595-668)||(11668017-11668090)
chr7 (509-570)||(28109304-28109365)
chr7 (597-687)||(28248485-28248579)
chr7 (607-656)||(40599998-40600047)
chr7 (595-656)||(41088854-41088915)
[»] chr6 (13 HSPs)
chr6 (589-687)||(30438797-30438895)
chr6 (595-687)||(28605572-28605664)
chr6 (596-687)||(10145218-10145309)
chr6 (597-687)||(12217494-12217585)
chr6 (595-687)||(12605612-12605704)
chr6 (595-670)||(2913404-2913479)
chr6 (595-686)||(23916182-23916273)
chr6 (597-687)||(8265026-8265116)
chr6 (595-681)||(17599513-17599601)
chr6 (595-687)||(3064937-3065029)
chr6 (599-687)||(9343174-9343262)
chr6 (604-666)||(24986007-24986069)
chr6 (595-669)||(33119906-33119980)
[»] chr3 (31 HSPs)
chr3 (598-687)||(27302084-27302173)
chr3 (601-687)||(16123810-16123896)
chr3 (597-687)||(43901635-43901725)
chr3 (597-687)||(53284370-53284460)
chr3 (595-687)||(45113736-45113828)
chr3 (605-687)||(50100206-50100288)
chr3 (595-687)||(31376177-31376269)
chr3 (595-683)||(2544516-2544605)
chr3 (590-687)||(39616908-39617005)
chr3 (595-687)||(53703784-53703877)
chr3 (595-687)||(8769188-8769279)
chr3 (595-666)||(42896144-42896215)
chr3 (598-687)||(48643609-48643698)
chr3 (595-668)||(51517030-51517103)
chr3 (595-666)||(21662961-21663032)
chr3 (612-687)||(21944343-21944418)
chr3 (595-658)||(50659951-50660014)
chr3 (595-658)||(53703732-53703795)
chr3 (589-647)||(2544433-2544491)
chr3 (597-687)||(24489317-24489407)
chr3 (595-668)||(12064911-12064984)
chr3 (595-658)||(31376258-31376321)
chr3 (595-658)||(39616994-39617057)
chr3 (455-510)||(40417622-40417677)
chr3 (592-687)||(44118182-44118277)
chr3 (592-622)||(25294779-25294809)
chr3 (645-687)||(48346502-48346544)
chr3 (595-661)||(53441909-53441975)
chr3 (595-624)||(19227425-19227454)
chr3 (598-667)||(19899687-19899756)
chr3 (601-670)||(25313286-25313355)
[»] scaffold0200 (1 HSPs)
scaffold0200 (592-687)||(25613-25708)
[»] chr2 (38 HSPs)
chr2 (595-687)||(36103395-36103487)
chr2 (597-685)||(40534517-40534605)
chr2 (592-687)||(45076396-45076491)
chr2 (619-687)||(23464522-23464590)
chr2 (604-687)||(15239703-15239786)
chr2 (602-687)||(28143752-28143839)
chr2 (597-687)||(3365279-3365369)
chr2 (513-569)||(29463290-29463346)
chr2 (597-687)||(6971624-6971714)
chr2 (597-687)||(25795242-25795332)
chr2 (607-687)||(27306765-27306843)
chr2 (606-687)||(27311590-27311671)
chr2 (595-669)||(12962777-12962851)
chr2 (601-670)||(38448946-38449015)
chr2 (604-687)||(11724324-11724408)
chr2 (636-687)||(41464768-41464819)
chr2 (604-670)||(11687486-11687552)
chr2 (610-668)||(41153128-41153186)
chr2 (595-665)||(45034473-45034543)
chr2 (595-665)||(45571105-45571175)
chr2 (595-665)||(45574772-45574842)
chr2 (595-665)||(45578439-45578509)
chr2 (595-665)||(45582106-45582176)
chr2 (595-665)||(45585773-45585843)
chr2 (595-665)||(45589440-45589510)
chr2 (595-665)||(45593107-45593177)
chr2 (595-665)||(45596774-45596844)
chr2 (595-665)||(45600441-45600511)
chr2 (595-665)||(45604108-45604178)
chr2 (595-665)||(45607775-45607845)
chr2 (595-665)||(45611442-45611512)
chr2 (595-665)||(45615109-45615179)
chr2 (610-687)||(4410794-4410871)
chr2 (603-687)||(9373404-9373488)
chr2 (595-668)||(12486065-12486138)
chr2 (609-670)||(14329209-14329270)
chr2 (595-656)||(25795323-25795384)
chr2 (582-619)||(39063766-39063803)
[»] scaffold0059 (1 HSPs)
scaffold0059 (595-687)||(26588-26680)
[»] scaffold0023 (1 HSPs)
scaffold0023 (595-687)||(112825-112917)
[»] scaffold0110 (1 HSPs)
scaffold0110 (598-687)||(40195-40285)
[»] scaffold0767 (2 HSPs)
scaffold0767 (606-670)||(3880-3944)
scaffold0767 (595-642)||(3811-3858)
[»] scaffold0533 (1 HSPs)
scaffold0533 (604-670)||(3251-3317)
[»] scaffold0474 (1 HSPs)
scaffold0474 (514-570)||(11330-11386)
[»] scaffold0287 (1 HSPs)
scaffold0287 (599-683)||(12804-12888)
[»] scaffold0460 (1 HSPs)
scaffold0460 (604-687)||(12267-12350)
[»] scaffold0377 (1 HSPs)
scaffold0377 (455-510)||(11935-11990)
[»] scaffold0176 (1 HSPs)
scaffold0176 (603-687)||(19348-19433)
[»] scaffold0001 (1 HSPs)
scaffold0001 (595-668)||(156770-156843)


Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Complemental strand, 3523014 - 3522450
Alignment:
Q  8 aatacctacttttgacatagtaatctttgcttccttgaatgaggttcaaaatactcttctttcnnnnnnntcttggacgaggaaatcttcaaggtagtcc 107  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||       ||||||| ||||||||| ||||||||||||    
T  3523014 aatacctacttttgacatagtagtctttgcttctttgaatgaggttcaaaatactcttctttcaaaaaaatcttggaggaggaaatcatcaaggtagtcc 3522915  T
Q  108 atatataattccaaaggaaacaaaagttcaggcccgaatggtttcaactgtgaattttttaagcctcctttgaggtctcctcaaggtggaaagtgttggt 207  Q
    |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3522914 ata----attccaaaggaaacaaaagttcaggcccgaatggtttcaactgtgaattttttaagccttttttgaggtctcctcaaggtggaaagtgttggt 3522819  T
Q  208 aatgttcgaccaattcaatcaaaatgaatgtcttccaaactatttttccttctannnnnnncctctcattccaaaggtccttgcttctcactctcggtcg 307  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  3522818 aatgttggatcaattcaatcaaaatgaatgtcttccaaactatttttccttctatttttttactctcattccaaaggtccttgcttctcactctcggtcg 3522719  T
Q  308 attaaagaattgattcccaatttgatttaactaaaacacacataattaggatatgaattttctgttcccaatcaatttcaattggcttttgcacacggtg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3522718 attaaagaattgattcccaatttgatttaactaaaacacacataattaggatatgaattttctgttcccaatcaatttcaattggctgttgcacacggtg 3522619  T
Q  408 gagatggcagtgttgttaattttttcttatcataataagtgtgtgcccaaagacacgataggataaaataatgttatcatctttcttatcatgcatgcac 507  Q
    ||| |||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  3522618 gaggtggcagcgttgttaattttttcttatcataataagtgtgtatccaaacacacgataggataaaataatgttatcatcttttttatcatgcgtgcac 3522519  T
Q  508 caataggataaatgtctatcatgttactatcatatcatatctttatctattttctaattatatcatgtc 576  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3522518 caataggataaatgtttatcatgttactatcatattatatctttatctattttctaattatatcatgtc 3522450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 20502236 - 20502141
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  20502236 tattccctccggtccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatacattaat 20502141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 33247294 - 33247386
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  33247294 tccctccggtccttattataagagacaattaacttttttggttcattctataagtgatatatctagtctatatttacaataagatatattaat 33247386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 38978888 - 38978796
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| ||||||||||||||||||||||  ||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  38978888 tccctccgatccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatatattaat 38978796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 864 - 974
Target Start/End: Complemental strand, 3521544 - 3521427
Alignment:
Q  864 ggtggtcatagatagatagtca-cataagtcaaaaccctcgaa-tcaacaaacag--acgaacac-gtca-ttgaattctgaaattga-catgggtggca 956  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||   |||||||| |||| ||||||||||||||||| |||||||||||    
T  3521544 ggtggtcatagatagatagtcaacataagtcaaaaccctcgaaatcaacaaacaagaacgaacaccgtcaattgaattctgaaattgaacatgggtggca 3521445  T
Q  957 taggtatattaccctcaa 974  Q
    ||||||||||||||||||    
T  3521444 taggtatattaccctcaa 3521427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 29452038 - 29451947
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| ||||||||||||||||||||| | ||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  29452038 tccctccgatccttattataagaaacaatt-gattttttggttcattgtgtaagtgatgtatctagtatatatttacaataagatacattaat 29451947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 792 - 864
Target Start/End: Complemental strand, 3521648 - 3521574
Alignment:
Q  792 caggccgccgtactgtcgcaactwtttaaaacccttgcatgtaaacacaa--catccttccttgttcttggaatg 864  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  3521648 caggccgccgtactgtcgcaactatttaaaacccttgcatgtaaacacaaacaatccttccttgttcttggaatg 3521574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 5355697 - 5355605
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||| ||  |||||||  |||||||| |||||||||||| | || |||||||||||||||||||||||||    
T  5355697 tccctccggtccttattataagaaacagttgacttttttagttcattgtgtaagtgatgtatttagtttatatttacaataagatacattaat 5355605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 7537167 - 7537075
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||| ||||||||   ||||||| |||||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  7537167 tccctccggtccttattataaaaaacaattgatttttttggttcattgtgtaagtgatgtatctagtatatatttacgataagatacattaat 7537075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 32455143 - 32455233
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||| ||||||||||  |||  |||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  32455143 tccctccggtccttgttataagaaa--attgacttttttgattcattgtggaagtgatgtatctagtctatatttacaataagatacattaat 32455233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 29002744 - 29002836
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| ||||| |||||||||||||||  |||||||| |||||||| |||||||||||||| |||||||||| | |||||||| ||||||    
T  29002744 tccctccgatccttgttataagaaacaattgacttttttggttcattgtgtaagtgatgtatctagtctatattttcgataagatatattaat 29002836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 29874319 - 29874411
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||| |||| ||||||||||||||  |||||||| |||||||| |||||||||||||| ||||||||||  ||||| ||||||||||    
T  29874319 tccctccggttcttaatataagaaacaattgacttttttggttcattgtttaagtgatgtatctagtctatatttttaataaaatacattaat 29874411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 455 - 565
Target Start/End: Original strand, 26449072 - 26449190
Alignment:
Q  455 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcata 546  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||   ||||||||        |||||||| |||||||||||| ||||||||||||||    
T  26449072 caaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataagtgtctatcatgtcactatcatatcata 26449171  T
Q  547 tctttatctattttctaat 565  Q
    | |||||| ||||||||||    
T  26449172 tttttatccattttctaat 26449190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 603 - 687
Target Start/End: Original strand, 9630245 - 9630329
Alignment:
Q  603 gtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||  ||||||| |||||||| |||||||| ||| | |  |||||||||||||||||||||||||    
T  9630245 gtccttattataagaaacaattaatttttttggttcattgtgtaagtgatatatttagattatatttacaataagatacattaat 9630329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 24173422 - 24173514
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| ||||||||||||||||| ||||   ||||||  |||||||| ||||||||||||||  ||||||||| |||||||||||||||||    
T  24173422 tccctccagtccttattataagaaataattgatttttttagttcattgtgtaagtgatgtatctaatctatattttcaataagatacattaat 24173514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 27600900 - 27600812
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| |||||||||||||||| ||||   ||||||| |||||||| |||||||| |||||  |||||||||||||||||||||||||||    
T  27600900 tccgatccttattataagaaataattgatttttttgattcattgtgtaagtgatttatctaatctatatttacaataagatacattaat 27600812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 607 - 687
Target Start/End: Complemental strand, 35205057 - 35204977
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||  |||||||  |||||||| |||| ||||||||| | ||||||||||||||||||||||||||    
T  35205057 ttattataagaaacaattgacttttttagttcattgtgtaagggatgtatctagactatatttacaataagatacattaat 35204977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 35212102 - 35212182
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||  |||||||  |||||||| |||| ||||||||| | ||||||||||||||||||||||||||    
T  35212102 ttattataagaaacaattgacttttttagttcattgtgtaagggatgtatctagactatatttacaataagatacattaat 35212182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 595 - 645
Target Start/End: Complemental strand, 30132934 - 30132884
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtat 645  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  30132934 tccctccggtccttattataagaaacaattaacttttttgattcattgtat 30132884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 13932607 - 13932515
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||||||||| ||||  |||||| | |||| ||| |||||||||||||| |||| |||||| ||  ||||||||||||    
T  13932607 tccctctggtccttattataagaaataattgactttttaggttcactgtgtaagtgatgtatctagtctctatttataacgagatacattaat 13932515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 33970671 - 33970751
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||| ||||||| ||| ||||||||| |||||||| | || |||||||  ||||| ||||||||||    
T  33970671 ttattataagaaacaattaacttttttattttattgtataaatgatgtatttagtatatatttttaataaaatacattaat 33970751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 588 - 655
Target Start/End: Complemental strand, 8680694 - 8680627
Alignment:
Q  588 gtactattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgta 655  Q
    |||||| ||||||||||||||||||||||||||| ||  |||||| | |||||||| |||||||||||    
T  8680694 gtactactccctccggtccttattataagaaacatttgactttttaggttcattgtttaagtgatgta 8680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 73786 - 73849
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||| ||||||||  |||||| | |||||||| ||| ||||||||||    
T  73786 tccctccggtccttattataaaaaacaattgactttttagattcattgtgtaaatgatgtatct 73849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 591 - 669
Target Start/End: Original strand, 5002138 - 5002216
Alignment:
Q  591 ctattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattt 669  Q
    |||||||||||||||||  |||||||||||| ||  |||||||| || |||| |||| |||||||| || |||||||||    
T  5002138 ctattccctccggtcctatttataagaaacatttgacttttttgattaattgcataaatgatgtatttgatctatattt 5002216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 645 - 687
Target Start/End: Complemental strand, 19211376 - 19211334
Alignment:
Q  645 taagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  19211376 taagtgatgtatctagtctatatttacaacaagatacattaat 19211334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 658
Target Start/End: Complemental strand, 13279030 - 13278969
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||| ||  |||||| | || ||||| ||||||||||||||    
T  13279030 cctccggtccttattataagaaacagttgactttttagatttattgtgtaagtgatgtatct 13278969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 664
Target Start/End: Original strand, 13789734 - 13789803
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtcta 664  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||    
T  13789734 tccctccggtcctatttataagaaacattttacttttttgattcattgcataaatgatgtatttggtcta 13789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 667
Target Start/End: Complemental strand, 10228213 - 10228141
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatat 667  Q
    ||||||||||| |  |||| ||||||| ||  |||||||| |||||||||||| |||||||||| ||||||||    
T  10228213 tccctccggtcttatttattagaaacatttgacttttttgattcattgtataaatgatgtatctcgtctatat 10228141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 669
Target Start/End: Complemental strand, 29299504 - 29299429
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgt-ttcattgtataagtgatgtatctggtctatattt 669  Q
    |||||||||||||  |||||||||||| ||  ||||||||  |||||||||||| ||||||||  |||||||||||    
T  29299504 tccctccggtcctagttataagaaacatttgacttttttgaattcattgtataaatgatgtattcggtctatattt 29299429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Original strand, 1015158 - 1015228
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  1015158 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 1015228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 11932114 - 11932024
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||  ||| |||||||| |||  ||||||| || ||| ||||| |||||||| ||||||||||||   | |||||||||||||    
T  11932114 cctccggtcctatttaaaagaaacatttaatttttttgatttattatataaatgatgtatttggtctatattttagacaagatacattaat 11932024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Original strand, 22731261 - 22731331
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  22731261 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 22731331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 632
Target Start/End: Original strand, 30132844 - 30132881
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttt 632  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  30132844 tccctccggtccttattataagaaaaaattaacttttt 30132881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 33478253 - 33478180
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  | |||||| ||||||| |||| |||||||| ||| |||||||    
T  33478253 tccctccggtcctatttataagaaacatttgacatttttgattcattgcataaatgatgtatttggcctatatt 33478180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 39466671 - 39466708
Alignment:
Q  514 gataaatgtctatcatgttactatcatatcatatcttt 551  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  39466671 gataaatgtatatcctgttactatcatatcatatcttt 39466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 54864213 - 54864118
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54864213 tattccctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctagtctatatttacaataagatacattaat 54864118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 43141765 - 43141860
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  43141765 tattccctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctaatctatatttacaataagatacattaat 43141860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 33622882 - 33622974
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  33622882 tccctccggtccttattataagaaacaattaacttttttggttcattgtataggtgatgtatctagtttatatttacaataagatacattaat 33622974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 25874846 - 25874754
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  25874846 tccctccggtccttattataagaaagaattaatttttttggttcattgtataagtgatgtatctagtctatatttacaataaaatacattaat 25874754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 33615925 - 33615833
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||| ||||||||   ||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  33615925 tccctccggtccttattataaaaaacaattgaatttttagattcattgtgtaagtgatgtatctagtctatatttacaataagatacattaat 33615833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 36196367 - 36196459
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||   ||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||||||||    
T  36196367 tccctccggtccttattataagaaacaattgatttttttggttcattttataagtgatgtatatagtctacatttacaataagatacattaat 36196459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 37895257 - 37895349
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||| ||   ||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  37895257 tccctccggtccttattataagaaacagttgatttttttggttcattgtataagtgatgtatctagtctacatttacaataaaatacattaat 37895349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 687
Target Start/End: Original strand, 50511251 - 50511339
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||| | | ||||||||||||||||||||||||||    
T  50511251 tccggtctttattataagaaacaattaacttttttggttcattgtgtaagtgatgtatttagactatatttacaataagatacattaat 50511339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 35877460 - 35877368
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||| ||||||||||||||||||||||  ||||||| |||||||| |||||||||||| | | ||||||||||||||||||||||||||    
T  35877460 tcccaccgatccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatttagactatatttacaataagatacattaat 35877368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 52136701 - 52136793
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| ||||| |||||| | |||||||| |||||||||||| | ||||||||||| || |||||||||||||    
T  52136701 tccctccggtccttattataagaaaaaattaactttttaggttcattgtgtaagtgatgtatttagtctatatttataacaagatacattaat 52136793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 600 - 685
Target Start/End: Original strand, 8347498 - 8347584
Alignment:
Q  600 ccggtccttattataagaaacaatt-agcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacatta 685  Q
    |||||||||||||||||||||| || |  ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  8347498 ccggtccttattataagaaacatttgattttttttggttcattgtataaatgatgtatctagtctatatttacaataagatacatta 8347584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 28460892 - 28460800
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| | ||||||||||||||||||| ||||||| | |||||| |||||||||||||| | |||||||||||||| |||||| ||||||    
T  28460892 tccctccgattcttattataagaaacaattggctttttagattcattatataagtgatgtatttagtctatatttacaacaagataaattaat 28460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 32193477 - 32193569
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||| | ||||| |||||||| ||||||||||  |||||| |||||||||    
T  32193477 tccctccggtccttattataagaaacaattgacttttttggttcattatgtaagtaatgtatctagtctatatttctaataaggtacattaat 32193569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 40592726 - 40592806
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||| || |||||||| || |||||||||||||    
T  40592726 ttattataagaaacaattaactttttggattcattgtataagtgatgtatctagtttatatttataacaagatacattaat 40592806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 43556693 - 43556785
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||   ||||||  ||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||    
T  43556693 tccctccggtccttattataagaaacaattgatttttttagttcgttgtgtaagtgacgtatctagtctacatttacaataagatacattaat 43556785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 601 - 687
Target Start/End: Complemental strand, 35929149 - 35929064
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  35929149 cggtcattattataagaaacaatt-gattttttggttcattgtgtaagtgatgtatctaatctatatttataataagatacattaat 35929064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 29686402 - 29686494
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||| ||  |||||| | |||||||| ||| |||||||||| ||||||||||| || || ||||||||||    
T  29686402 tccctccggtccttattataagaaacatttgactttttaggttcattgtgtaaatgatgtatctagtctatatttataacaatatacattaat 29686494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 1205228 - 1205136
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgt-ttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| || ||||||||||||| |||| | |||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  1205228 tccctccgatctttattataagaaaaaatt-gattttttatattcattgtctaagtgatgtatctagtctatatttataataagatacattaat 1205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 595 - 676
Target Start/End: Complemental strand, 38208395 - 38208314
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataa 676  Q
    ||||||||||||||| ||||||||||||||  | |||||  |||||||| |||||||||||||| |||||||||| ||||||    
T  38208395 tccctccggtccttaatataagaaacaattgacatttttagttcattgtttaagtgatgtatctagtctatattttcaataa 38208314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 7086273 - 7086189
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacat 683  Q
    ||||||||||||||||||||||| ||  |||||| | |||||||| |||||||||||||||||||| ||||| ||  ||||||||    
T  7086273 tccggtccttattataagaaacatttgactttttaggttcattgtttaagtgatgtatctggtctacatttataacgagatacat 7086189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 25756714 - 25756806
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| ||||  |||||| | |||| ||| |||||||||||||| |||| |||||| ||  ||||||||||||    
T  25756714 tccctccggtccttattataagaaataattgactttttaggttcactgtgtaagtgatgtatctagtctctatttataacgagatacattaat 25756806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 56491074 - 56491166
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||| | |||||  |||||| | |||||||||||||| |||||||| ||||||||||| ||  || |||||||||    
T  56491074 tccctccggtccttattataagcagcaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgaggtacattaat 56491166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 27587245 - 27587340
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||||||||||||||||||  |||||| | || ||| ||||| |||||||||| || |||||||| ||  ||||||||||||    
T  27587245 tatttcctccggtccttattataagaaacaattgactttttagatttattatataaatgatgtatctagtgtatatttataacgagatacattaat 27587340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 687
Target Start/End: Complemental strand, 31853206 - 31853121
Alignment:
Q  602 ggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||| | ||  |||||| | |||||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  31853206 ggtctttattataagaaaaatttgactttttaggttcattgtgtaagtgatgtatctagtctatatttataacaagatacattaat 31853121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 596 - 664
Target Start/End: Original strand, 1100899 - 1100967
Alignment:
Q  596 ccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtcta 664  Q
    |||||||||||||||||||||||||| ||  |||||| | |||||||| |||||||||||||| |||||    
T  1100899 ccctccggtccttattataagaaacatttgactttttaggttcattgtttaagtgatgtatctagtcta 1100967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 4418243 - 4418151
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| ||||   ||||| | |||||||| |||||||||||| | || |||||||| || || ||||||||||    
T  4418243 tccctccggtccttattataagaaaaaattgattttttaggttcattgtgtaagtgatgtatttagtttatatttataacaaaatacattaat 4418151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 596 - 675
Target Start/End: Original strand, 50511391 - 50511470
Alignment:
Q  596 ccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaata 675  Q
    |||||||||||||||||||||||||| ||  |||||||  |||||||| |||| ||||| ||| || |||||||||||||    
T  50511391 ccctccggtccttattataagaaacacttgacttttttagttcattgtgtaagggatgtgtctagtttatatttacaata 50511470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 603 - 670
Target Start/End: Complemental strand, 54673448 - 54673381
Alignment:
Q  603 gtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    ||||||||||||||||||||||  |||||| | |||||| | |||||||||||||| |||||||||||    
T  54673448 gtccttattataagaaacaattgactttttaggttcattatgtaagtgatgtatctagtctatattta 54673381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 42160117 - 42160027
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||| ||||||||||||||| ||  |||||| |  ||||| | |||||||||||| | ||||||||||| || |||||||||||||    
T  42160117 cctccggtctttattataagaaacatttgactttttagaatcattatgtaagtgatgtatttagtctatatttataacaagatacattaat 42160027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 19350616 - 19350696
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataaga 678  Q
    |||||| || |||||||||||||||||||  ||||||| |||||||| ||||||| |||||| |||| |||||| |||||||    
T  19350616 cctccgatctttattataagaaacaattaatttttttggttcattgtgtaagtga-gtatctagtctttatttataataaga 19350696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 30192042 - 30191969
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    ||||||||||| |  |||||||||||| ||| |||||||| ||||||| |||| |||||||| |||||||||||    
T  30192042 tccctccggtcgtatttataagaaacatttaacttttttgattcattgcataaatgatgtatttggtctatatt 30191969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 687
Target Start/End: Original strand, 22019940 - 22020028
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||| |||||||| |||||| | |||||| | |||||||||| |||  |||||||||| ||  |||| |||||||    
T  22019940 tccggtccttattataagtaacaattaactttttagattcattctgtaagtgatgtgtctaatctatatttataacgagatgcattaat 22020028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 52966409 - 52966489
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||| | ||  ||||||   ||||||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  52966409 ttattataagaaaaatttgactttttaagttcattgtataagtgatgtatctagtctatatttataacaagatgcattaat 52966489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 597 - 668
Target Start/End: Complemental strand, 48196034 - 48195963
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  48196034 cctccggtcctatttataagaaacatttgacttttttggttcattgcataaatgatgtatttggtctatatt 48195963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 637 - 687
Target Start/End: Original strand, 50511471 - 50511521
Alignment:
Q  637 tcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| |||| ||||||||| || |||||||||||||||||||||||||    
T  50511471 tcattgtgtaagggatgtatctagtttatatttacaataagatacattaat 50511521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 683
Target Start/End: Complemental strand, 1140984 - 1140923
Alignment:
Q  622 attagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacat 683  Q
    |||| |||||| | |||||||| |||||||||||||||||||||||||| || || ||||||    
T  1140984 attaactttttagattcattgtgtaagtgatgtatctggtctatatttataacaaaatacat 1140923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 566
Target Start/End: Complemental strand, 26620044 - 26619934
Alignment:
Q  464 gataggataaaataatgttatcatctttcttatcatgcatgcaccaat--------aggataaatgtctatcatgttactatcatatcatatctttatct 555  Q
    |||| |||||||||||| |||||| ||| |||||||||||||| |||         |||||||||||||||||||||| ||||||||| |||  ||||      
T  26620044 gataagataaaataatgctatcatattttttatcatgcatgcatcaaatgcatgaaaggataaatgtctatcatgttattatcatatcctattcttattc 26619945  T
Q  556 attttctaatt 566  Q
    |||||||||||    
T  26619944 attttctaatt 26619934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 29686546 - 29686485
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtat 656  Q
    |||||||||||||||||||||||||||||||  |||||   |||||||||||| | ||||||    
T  29686546 tccctccggtccttattataagaaacaattaattttttaaattcattgtataattaatgtat 29686485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 48361198 - 48361125
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    ||||||| |||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  48361198 tccctcctgtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatatt 48361125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 687
Target Start/End: Original strand, 52277989 - 52278061
Alignment:
Q  617 aaacaattagcttttttgtttcattgtataagtgat--gtatctggtctatatttacaataagatacattaat 687  Q
    |||||| || |||||||| |||||| ||||||||||  |||| | ||||||||||||||||||||| ||||||    
T  52277989 aaacaaataacttttttgattcattatataagtgatatgtatttagtctatatttacaataagatatattaat 52278061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 24100761 - 24100824
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    |||||||| |||||||||||||||| ||||| |||||| | ||||||| |||| | ||||||||    
T  24100761 tccctccgatccttattataagaaataattaactttttagattcattgaataattaatgtatct 24100824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 658
Target Start/End: Complemental strand, 25756858 - 25756795
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||||||||  ||||||   ||||||| |||| | ||||||||    
T  25756858 tccctccggtccttattataagaaacaattgactttttatgttcattggataattaatgtatct 25756795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 43020901 - 43020831
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  43020901 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 43020831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 47866181 - 47866111
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  47866181 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 47866111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 19150869 - 19150796
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||| ||||||  |||||||||||| ||  |||||| | ||||||| |||| |||||||| |||||||||||    
T  19150869 tccctctggtcctatttataagaaacattttactttttcgattcattgcataaatgatgtatttggtctatatt 19150796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 589 - 670
Target Start/End: Original strand, 34226383 - 34226464
Alignment:
Q  589 tactattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    ||||||||||| |||  ||  |||||| ||||||||  |||||||| ||||||| |||| |||||||| |||||||| ||||    
T  34226383 tactattcccttcggatctatttataataaacaatttacttttttgattcattgaataattgatgtatttggtctattttta 34226464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 512 - 565
Target Start/End: Original strand, 34667161 - 34667214
Alignment:
Q  512 aggataaatgtctatcatgttactatcatatcatatctttatctattttctaat 565  Q
    ||||||||| | |||||||| ||||||||||| |||||||||| ||||| ||||    
T  34667161 aggataaatatttatcatgtcactatcatatcctatctttatccattttttaat 34667214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 36132637 - 36132710
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    ||||||| |||||  |||||||||| | ||  |||||||| |||||||||||| |||||||| | |||||||||    
T  36132637 tccctccagtcctatttataagaaatatttgacttttttgattcattgtataaatgatgtatttagtctatatt 36132710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 44111747 - 44111820
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| || |||  |||| |||||||| |||||||||||    
T  44111747 tccctccggtcctatttataagaaacatttgacttttttgattaattacataaatgatgtatttggtctatatt 44111820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 35584029 - 35583937
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  35584029 tccctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctaatctatatttacaataagatacattaat 35583937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 29690580 - 29690490
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  29690580 cctccggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatctagtctatatttataataagatacattaat 29690490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 13831877 - 13831969
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  13831877 tcccttcggtccttattataagaaacaattaacttttttggttcattgtataagtgatgtatatagtctatatttacaataagatacattaat 13831969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 595 - 685
Target Start/End: Complemental strand, 34604927 - 34604837
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacatta 685  Q
    ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34604927 tccctccggtccttattataagaaacaattgatttttttggttcattgtataagtgatgtatctagtctatatttacaataagatacatta 34604837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 7548499 - 7548591
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||| | | |||||||||||||||||| |||||||    
T  7548499 tccctccggtccttattataagaaacaattaatttttttggttcattgtgtaagtgatgtatttagactatatttacaataagatgcattaat 7548591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 45372851 - 45372759
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||| |||||||  |||||||| |||| ||| |||||||||||||| |||||||||| |||||||||||||||||    
T  45372851 tccctccggtccttattataagtaacaattgacttttttgattcaatgtgtaagtgatgtatctagtctatattttcaataagatacattaat 45372759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 44579907 - 44579987
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||| |||||||| || ||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  44579907 ttattataagaaacaattaacttttttgatttattgtataagtaatatatctagtctatatttacaataagatacattaat 44579987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 43932051 - 43932143
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||  |||||| | ||||||||| || ||||||||||  |||||||||| || |||||||||||||    
T  43932051 tccctccggtccttattataagaaacaattgactttttaggttcattgtacaaatgatgtatctaatctatatttataacaagatacattaat 43932143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 464 - 571
Target Start/End: Original strand, 32897622 - 32897737
Alignment:
Q  464 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcatatctttatct 555  Q
    |||||||||||| ||||||||| |||||||||||||   ||||||||        ||||||||||||||||||||| |||||| ||||||||||| |||     
T  32897622 gataggataaaaaaatgttatcctctttcttatcatatctgcaccaaacgtatgataggataaatgtctatcatgtcactatcctatcatatcttgatcc 32897721  T
Q  556 attttctaattatatc 571  Q
    |||||||||| |||||    
T  32897722 attttctaatcatatc 32897737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 602 - 687
Target Start/End: Complemental strand, 43292707 - 43292622
Alignment:
Q  602 ggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||| ||  |||||| | |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  43292707 ggtccttattataagaaacatttgactttttaggttcattatgtaagtgatgtatctagtctatatttataacaagatacattaat 43292622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 9420589 - 9420681
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||| | |||||  | |||| | |||||||||||||| |||||||||||||||||||| ||  || |||||||||    
T  9420589 tccctccggtccttattataagcagcaattgacgttttagattcattgtataagtaatgtatctggtctatatttataacgaggtacattaat 9420681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 43409836 - 43409928
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||| | |||||  |||||| | |||||||||||||| |||||||| ||||||||||| ||  || |||||||||    
T  43409836 tccctccggtccttattataagcagcaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgaggtacattaat 43409928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 40645714 - 40645804
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| ||||||||||||||||||| ||  ||||||   |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  40645714 cctccagtccttattataagaaacatttgactttttaagttcattatgtaagtgatgtatctagtctatatttataacaagatacattaat 40645804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 595 - 669
Target Start/End: Complemental strand, 45180185 - 45180111
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattt 669  Q
    ||||| ||||| ||||||||| ||||||||  |||||||| |||||||| |||||||||||||| ||||||||||    
T  45180185 tcccttcggtctttattataaaaaacaattgacttttttggttcattgtgtaagtgatgtatctagtctatattt 45180111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 598 - 687
Target Start/End: Complemental strand, 34745400 - 34745311
Alignment:
Q  598 ctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| || ||||||||||||||| ||   ||||| | |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  34745400 ctccgatctttattataagaaacatttgattttttagattcattatgtaagtgatgtatctagtctatatttataacaagatacattaat 34745311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 34745259 - 34745322
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| | |||| | ||||||||    
T  34745259 tccctccggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatct 34745322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 43292570 - 43292633
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| | |||| | ||||||||    
T  43292570 tccctccggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatct 43292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 658
Target Start/End: Complemental strand, 43932195 - 43932132
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||||||||  |||||| | ||||||| |||| | ||||||||    
T  43932195 tccctccggtccttattataagaaacaattgactttttagattcattgaataattaatgtatct 43932132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 670
Target Start/End: Original strand, 9550111 - 9550186
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    ||||||||||| ||||||||||||| ||||   |||||   |||||||  |||||||||||||| |||||||||||    
T  9550111 tccctccggtctttattataagaaataattgattttttaaattcattgggtaagtgatgtatctagtctatattta 9550186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 685
Target Start/End: Complemental strand, 24599808 - 24599725
Alignment:
Q  602 ggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacatta 685  Q
    ||||||||| |||||||||||||   ||||| | |||||||||||| ||||||||||   ||||||||| ||| | ||||||||    
T  24599808 ggtccttataataagaaacaattgattttttagattcattgtataactgatgtatctaacctatatttataatgaaatacatta 24599725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 601 - 687
Target Start/End: Complemental strand, 9633221 - 9633135
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| |||||||||||| ||  ||||||   |||||||| |||   |||||||| ||||||||||| || |||||||||||||    
T  9633221 cggtccttcttataagaaacatttgactttttaagttcattgtgtaaacaatgtatctagtctatatttataacaagatacattaat 9633135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 12958921 - 12958851
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  12958921 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 12958851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 22429680 - 22429610
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  22429680 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 22429610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 609 - 687
Target Start/End: Original strand, 38298517 - 38298595
Alignment:
Q  609 attataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||| ||||  ||||||   |||||||| |||||||||||||| | ||||||||| ||  ||||||||||||    
T  38298517 attataagaaataattgactttttaagttcattgtgtaagtgatgtatctagcctatatttataacgagatacattaat 38298595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 44796487 - 44796417
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  44796487 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 44796417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 658
Target Start/End: Complemental strand, 5356937 - 5356876
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||| ||| |||||||||| |||| ||| |||||| | || ||||||||||||||||||||    
T  5356937 cctcccgtctttattataagcaacagttaactttttagatttattgtataagtgatgtatct 5356876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 658
Target Start/End: Original strand, 9633089 - 9633146
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||  | |||| | |||||||||||| | ||||||||    
T  9633089 cggtccttattataagaaacaattgacgttttagattcattgtataattaatgtatct 9633146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 668
Target Start/End: Complemental strand, 10839904 - 10839836
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||  |||||||||||| ||| |||||| | ||||||| |||| |||||||| |||||||||||    
T  10839904 tccggtcctatttataagaaacatttaacttttt-gattcattgcataaatgatgtatttggtctatatt 10839836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 3e-32; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 45977093 - 45977188
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  45977093 tattacctccggtccttattataagaaacaattaacttttttggtttattgtataggtgatgtatctagtctatatttacaataagatacattaat 45977188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 13770855 - 13770763
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||| |||||||||||||||| ||  |||||||  || ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  13770855 tccctccggttcttattataagaaacagtttacttttttaatttattgtgtaagtgatgtatctagtctatatttacaataagatacattaat 13770763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 594 - 687
Target Start/End: Complemental strand, 15699611 - 15699518
Alignment:
Q  594 ttccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| |||||||||||| |||||||||   ||||| | || |||||||||||||||||||| |||||||||||||| |||||||||||||    
T  15699611 ttccctcccgtccttattatatgaaacaattgaatttttaggtttattgtataagtgatgtatctagtctatatttacaacaagatacattaat 15699518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 19998553 - 19998465
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||   ||||| | |||||||| |||||||||||||| |||||||||||||| |||||| ||||||    
T  19998553 tccggtccttattataagaaacaattgaatttttagattcattgtgtaagtgatgtatctagtctatatttacaacaagatatattaat 19998465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 27687843 - 27687935
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||| |||||||||||||| ||||   ||||||  |||||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  27687843 tccctccggttcttattataagaaataattgaattttttagttcattatgtaagtgatgtatctagtctatatttacaataagatacattaat 27687935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 44224411 - 44224323
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| ||||||||||| ||| |||||  ||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  44224411 tccggcccttattataaaaaataattaatttttttggttcattgtacaagtgatgtatctagactatatttacaataagatacattaat 44224323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 29438282 - 29438192
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| || || |||||||||||||||  |||||||  |||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  29438282 cctccgctcattgttataagaaacaattgacttttttagttcattgtgtaagtgatgtatctagtctatattttcaataagatacattaat 29438192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 51590576 - 51590484
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| | ||  | |||| | |||||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  51590576 tccctccggtccttattataagaaaaagttgaccttttagattcattgtgtaagtgatgtatctagtctatatttataacaagatacattaat 51590484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 52279236 - 52279328
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||| |||| |||||   ||||||| |||||||| |||||||||||||  ||||||||||||||||||||| ||||||    
T  52279236 tccctctggtccttattattagaagcaattgatttttttggttcattgtgtaagtgatgtatcaagtctatatttacaataagatatattaat 52279328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 52030872 - 52030962
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||| ||||   ||||| ||||||| || ||||||||||||||  | |||||||| ||||||||||||||||    
T  52030872 cctccggtccttattataagaaaaaattgattttttagtttcatcgtgtaagtgatgtatctaatttatatttataataagatacattaat 52030962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 13321860 - 13321768
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||||||||||| ||   ||||| | |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  13321860 tccctctggtccttattataagaaacatttgattttttagattcattatgtaagtgatgtatctagtctatatttataacaagatacattaat 13321768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 31050388 - 31050304
Alignment:
Q  603 gtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||  |||||| | || ||||| |||||||||||| | |||||||||||||| || ||||||||||    
T  31050388 gtccttattataagaaacaattgactttttaggtttattgtgtaagtgatgtatttagtctatatttacaacaaaatacattaat 31050304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 599 - 687
Target Start/End: Original strand, 34174892 - 34174980
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| |||||||||||||||||||||  |||||| | |||||||| |||||||||||| | || ||||||| ||| |||||||||||||    
T  34174892 tccgatccttattataagaaacaattgactttttaggttcattgtgtaagtgatgtatttagtttatatttgcaacaagatacattaat 34174980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 13320305 - 13320397
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||| ||||||||||||||||||||  ||||||  || ||||| ||| |||||||| |   ||||||||||||||||||| ||||||    
T  13320305 tccctccggttcttattataagaaacaattaattttttttgtttattgtgtaaatgatgtatttaaactatatttacaataagatatattaat 13320397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 514 - 574
Target Start/End: Complemental strand, 42471333 - 42471273
Alignment:
Q  514 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatatcatg 574  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||  |||||||    
T  42471333 gataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatcatg 42471273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 48565673 - 48565581
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| | ||| ||||||   |||||||| || ||||||||| | ||||||||||| || ||||||| |||||    
T  48565673 tccctccggtccttattataagaaaaagttaactttttaagttcattgtgtaggtgatgtatttagtctatatttataacaagatactttaat 48565581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 26924359 - 26924286
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  26924359 tccctccggtcctatttataagaaacatttgacttttttgattcattgaataaatgatgtatttggtctatatt 26924286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 683
Target Start/End: Complemental strand, 18038834 - 18038746
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacat 683  Q
    ||||||||||||||||||||| ||||| ||  |||||| | |||||||| ||||||||||||||  |||| ||||| ||  ||||||||    
T  18038834 tccctccggtccttattataaaaaacatttgactttttagattcattgtttaagtgatgtatctaatctacatttataacgagatacat 18038746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 22182767 - 22182859
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||| |||||||  |||||| | || ||||| |||||||||||||| | | ||||||| ||  |||| |||||||    
T  22182767 tccctccggtccttattataagtaacaattgactttttagatttattgtgtaagtgatgtatctagcccatatttataacgagatgcattaat 22182859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 668
Target Start/End: Original strand, 26760172 - 26760248
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    ||||||||| ||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  26760172 tattccctcgggtcctatttataagaaacatttgacttttttgattcattgaataaatgatgtatttggtctatatt 26760248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 668
Target Start/End: Original strand, 44939065 - 44939141
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||| |||||||||||  |||||||||||| ||  |||||||  |||||||||||| |||||||| |||||||||||    
T  44939065 tatttcctccggtcctatttataagaaacatttgactttttttattcattgtataaatgatgtatttggtctatatt 44939141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 37179054 - 37178964
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| ||| ||||||||||||| ||  |||||||| || ||||||||| |||||||| | ||||||||||   | |||||||||||||    
T  37179054 cctccggccctaattataagaaacatttgacttttttgatttattgtataaatgatgtatttagtctatattttagacaagatacattaat 37178964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 596 - 668
Target Start/End: Complemental strand, 34332621 - 34332549
Alignment:
Q  596 ccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    ||||| ||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  34332621 ccctctggtcctatttataagaaacatttgacttttttgattcattggataaatgatgtatttggtctatatt 34332549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 668
Target Start/End: Complemental strand, 49944977 - 49944906
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||  ||| |||||||| ||   ||||||| |||||||||||| |||||||| |||||||||||    
T  49944977 cctccggtcctatttacaagaaacatttgatttttttgattcattgtataaatgatgtatttggtctatatt 49944906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 51590432 - 51590495
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||| ||||||||  |||||||| ||||| | |||| | ||||||||    
T  51590432 tccctccggtccttattataaaaaacaattgacttttttggttcatagaataattaatgtatct 51590495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 519835 - 519908
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||| ||||| ||  |||||||| || ||||||||| |||||||| || ||||||||    
T  519835 tccctccggtcctatttataataaacatttgacttttttgatttattgtataaatgatgtatttgatctatatt 519908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 18744701 - 18744629
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  ||| |||||||| ||| |||||||  ||||||| |||| |||||||| |||||||||||    
T  18744701 tccctccggtcctatttaaaagaaacatttaactttttttattcattgcataaatgatgtat-tggtctatatt 18744629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 29064149 - 29064243
Alignment:
Q  595 tccctccggtccttatta---taagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| ||||||||||   ||||||| |||||  ||||| | |||||||||||| |||||||| |  |||||||||||||||| ||| ||||||    
T  29064149 tccctcccgtccttattactataagaaaaaattat-tttttagattcattgtataaatgatgtatttaatctatatttacaataaaatatattaat 29064243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 41487937 - 41487845
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||||   ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  41487937 tccctccggtccttattataagaaacaattgatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatacattaat 41487845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 598 - 687
Target Start/End: Complemental strand, 22618306 - 22618217
Alignment:
Q  598 ctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||||||  |||||| | |||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  22618306 ctccggtccttattataagaaacaattgactttttaggttcattgtgtaagtgatgtatctagtctatatttacaacaagatacattaat 22618217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 687
Target Start/End: Original strand, 41395668 - 41395756
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  41395668 tccgatccttattataagaaacaattaacttttttaattcattgtataagtgatgtatctagtctatatttataataagatatattaat 41395756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 607 - 687
Target Start/End: Complemental strand, 45123379 - 45123299
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  45123379 ttattataagaaataattaacttttttgattcattgtataagtgatgtatctaatctatatttataataagatacattaat 45123299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 47280176 - 47280267
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| || ||||||||||||||||||| |||||||||| |||||||||| | |||||| | ||||||||||||||||||||||||||||    
T  47280176 tccctccgatctttattataagaaacaattaacttttttgtt-cattgtataaataatgtatttagtctatatttacaataagatacattaat 47280267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 599 - 687
Target Start/End: Original strand, 47484027 - 47484115
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||   ||||||  |||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  47484027 tccggtccttattataagaaacaattgattttttttattcattgcgtaagtgatgtatctagtctatatttacaataagatacattaat 47484115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 7456418 - 7456513
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| |||||||||||||||||||||| | ||  |||||| | |||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  7456418 tattcgctccggtccttattataagaaatatttgactttttagattcattgtataaatgatgtatctagtctatatttacaacaagatacattaat 7456513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 595 - 680
Target Start/End: Complemental strand, 27320440 - 27320355
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagata 680  Q
    |||||| |||||||||||||||||||||||   ||||||| |||||||||||||| |||| ||| |||||||||||||||||||||    
T  27320440 tccctctggtccttattataagaaacaattgatttttttggttcattgtataagtaatgtttctagtctatatttacaataagata 27320355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 683
Target Start/End: Original strand, 40234768 - 40234856
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacat 683  Q
    |||||||||| |||||||||||||||||||  |||||| | |||||||| ||| |||||||||| |||||||||||||| |||||||||    
T  40234768 tccctccggttcttattataagaaacaattgactttttagattcattgtgtaactgatgtatctagtctatatttacaacaagatacat 40234856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 10674272 - 10674177
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||| |||||||||||||||||||||  |||||| | |||||| | ||||||||||||||  |||||||||| || |||||||||||||    
T  10674272 tattccctccgatccttattataagaaacaattgactttttagattcattatgtaagtgatgtatctaatctatatttataacaagatacattaat 10674177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 18064864 - 18064776
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||| ||||||||||| ||  | |||||  |||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  18064864 tccggtccttaatataagaaacagttgacatttttagttcattgtttaagtgatgtatctagtctatattttcaataagatacattaat 18064776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 47612436 - 47612344
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||| | |||||  |||||| | |||||||||||||| |||||||| ||||||||||| ||  ||||||||||||    
T  47612436 tccctccggtccttattataagcagcaattgactttttaggttcattgtataagtaatgtatctagtctatatttataacgagatacattaat 47612344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 602 - 687
Target Start/End: Original strand, 37006465 - 37006550
Alignment:
Q  602 ggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||||||||  |||||||  || |||||||||||||||||||  || ||||||||||||| |||||||||||    
T  37006465 ggtcgttattataagaaacaattgacttttttagtttattgtataagtgatgtatccagtttatatttacaatatgatacattaat 37006550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 24164662 - 24164570
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| |||||||||||||||||| ||  |||||| | |||||| | |||||||||||||| ||||||||||  || |||||||||||||    
T  24164662 tccctccgatccttattataagaaacatttgactttttaggttcattatgtaagtgatgtatctagtctatatttctaacaagatacattaat 24164570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 45025738 - 45025648
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||| ||||||||||||||| ||   ||||| | |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  45025738 cctccggtctttattataagaaacatttgattttttagattcattatgtaagtgatgtatctagtctatatttataacaagatacattaat 45025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 24932515 - 24932454
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtat 656  Q
    |||||||| |||||||||||||| ||||||| |||||||  |||||||||||||||||||||    
T  24932515 tccctccgatccttattataagagacaattaacttttttagttcattgtataagtgatgtat 24932454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 686
Target Start/End: Complemental strand, 33901182 - 33901093
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaa 686  Q
    ||||||||| ||||||||||||||| ||  |||||| | |||||| | ||| |||||||||| ||||||||||| || ||||||||||||    
T  33901182 cctccggtctttattataagaaacatttgactttttagattcattatgtaaatgatgtatctagtctatatttataacaagatacattaa 33901093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 41089001 - 41088906
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||||||||||||||||||  |||||| | || || || ||||| |||||||| ||||||||||| ||  | ||||||||||    
T  41089001 tattacctccggtccttattataagaaacaattgactttttaggttaatcgtgtaagtaatgtatctagtctatatttataacgaaatacattaat 41088906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 29559441 - 29559531
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||||||||||||  |||||| | ||||| || ||||| |||||||| ||||||||||| ||  | ||||||||||    
T  29559441 cctccgatccttattataagaaacaattgactttttaggttcatcgtgtaagtaatgtatctagtctatatttataacgaaatacattaat 29559531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 605 - 687
Target Start/End: Original strand, 33039572 - 33039654
Alignment:
Q  605 ccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| |||||||||||  |||||| | |||||||| | || ||||||||| |||||||||||||| | |||||||||||    
T  33039572 ccttattaaaagaaacaattgactttttaggttcattgtgttagggatgtatctagtctatatttacaacatgatacattaat 33039654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 28677319 - 28677392
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  28677319 tccctccggtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatatt 28677392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 36245378 - 36245451
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  36245378 tccctccggtcctgtttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatatt 36245451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 3633197 - 3633281
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacat 683  Q
    ||||||||||||||||||||||| ||  |||||| | |||||| | |||||||||||||| ||||| ||||| ||  ||||||||    
T  3633197 tccggtccttattataagaaacatttgactttttaggttcattatttaagtgatgtatctagtctacatttataacgagatacat 3633281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 656
Target Start/End: Complemental strand, 13860366 - 13860302
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtat 656  Q
    ||||||||||| |||||||||||||||||||||  |||||| | |||||||||||| | ||||||    
T  13860366 tattccctccgatccttattataagaaacaattgactttttagattcattgtataattaatgtat 13860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 39413966 - 39413882
Alignment:
Q  603 gtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| ||||||||||||||||   |||||   |||||||||||||||||||||||  || |||||||||| | |||||||||||    
T  39413966 gtcctaattataagaaacaattgattttttaagttcattgtataagtgatgtatctaatcaatatttacaacatgatacattaat 39413882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 14543417 - 14543322
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| || |||||||||||||||||||||   | |||   || ||| | |||||||||||||| |||||||||||||  |||||||||||||    
T  14543417 tattcccttcgatccttattataagaaacaattgattgtttaagtttattatgtaagtgatgtatctagtctatatttacatcaagatacattaat 14543322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 645 - 687
Target Start/End: Complemental strand, 12807004 - 12806962
Alignment:
Q  645 taagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||| | ||||||||||||||||||||||||||||    
T  12807004 taagtgatgtatgtagtctatatttacaataagatacattaat 12806962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 592 - 658
Target Start/End: Original strand, 24164515 - 24164581
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    |||||||||||||||||||||||||||||||||   ||||||| ||||| | |||| | ||||||||    
T  24164515 tattccctccggtccttattataagaaacaattgatttttttggttcatagaataattaatgtatct 24164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 464 - 510
Target Start/End: Original strand, 42078145 - 42078191
Alignment:
Q  464 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa 510  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  42078145 gatatgataaaataatgttatcatatttcttatcatgcgtgcaccaa 42078191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 8566099 - 8566156
Alignment:
Q  611 tataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    ||||||||||| ||| |||||||| ||||||| |||| |||||||| |||||||||||    
T  8566099 tataagaaacatttaacttttttgattcattgcataaatgatgtatttggtctatatt 8566156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 610 - 668
Target Start/End: Original strand, 2523787 - 2523845
Alignment:
Q  610 ttataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||| ||  |||||||| ||||||| ||||  |||||||||||||||||||    
T  2523787 ttataagaaacatttgacttttttgattcattgcataaacgatgtatctggtctatatt 2523845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 4826907 - 4826837
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  4826907 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 4826837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 610 - 668
Target Start/End: Complemental strand, 6838506 - 6838448
Alignment:
Q  610 ttataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  6838506 ttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatatt 6838448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Original strand, 28020003 - 28020073
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||| ||||||  |||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  28020003 tccctctggtcctatttataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 28020073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 611 - 665
Target Start/End: Original strand, 32811396 - 32811450
Alignment:
Q  611 tataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    ||||||||||||||  |||||||| ||||||| |||| |||||||| ||||||||    
T  32811396 tataagaaacaatttacttttttgattcattgaataattgatgtatttggtctat 32811450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 601 - 687
Target Start/End: Complemental strand, 40198744 - 40198658
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| |||||||||||||| |  |||||||  || ||| | |||| ||||||| | |||||||||||||| ||||| |||||||    
T  40198744 cggtcctaattataagaaacaaatgacttttttagtttattatgtaagcgatgtatttagtctatatttacaacaagatgcattaat 40198658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 41850738 - 41850668
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattt 669  Q
    |||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| || |||||||||    
T  41850738 tccggtcctatttataagaaacattttacttttttgattcattgcataaatgatgtatttgctctatattt 41850668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 11668017 - 11668090
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||| ||| || ||||||||    
T  11668017 tccctccggtcctatttataagaaacatttgacttttttgattcattgcataaatgatatatttgatctatatt 11668090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 509 - 570
Target Start/End: Original strand, 28109304 - 28109365
Alignment:
Q  509 aataggataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 570  Q
    |||| ||||||||| ||| | |||||||||||||| |||||||||| | ||||| |||||||    
T  28109304 aatatgataaatgtttattacgttactatcatatcttatctttatccagtttcttattatat 28109365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 28248579 - 28248485
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttc----attgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||| |||||| |||||||||||| |||||| | |||    ||||| |||||||||||| | ||||||||||| ||  |||| |||||||    
T  28248579 cctccggtcattattacaagaaacaattaactttttaggttcattaattgtgtaagtgatgtatatagtctatatttataacgagatgcattaat 28248485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 607 - 656
Target Start/End: Complemental strand, 40600047 - 40599998
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtat 656  Q
    |||||||||| |||||||| |||||| | |||||||| ||||||||||||    
T  40600047 ttattataagcaacaattaactttttaggttcattgtgtaagtgatgtat 40599998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 656
Target Start/End: Original strand, 41088854 - 41088915
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtat 656  Q
    |||||||||||||||||| |||||||||||  |||||| | ||||||| |||| | ||||||    
T  41088854 tccctccggtccttattacaagaaacaattgactttttagattcattgaataattaatgtat 41088915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 589 - 687
Target Start/End: Complemental strand, 30438895 - 30438797
Alignment:
Q  589 tactattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| |||||||| |||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  30438895 tactactccctccgatccttattataagaaataattaacttttttggtttattgtataagtgatgtatctagtctatatttacaataaaatacattaat 30438797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 28605572 - 28605664
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |   ||||||||||||||||||||||||||    
T  28605572 tccctctggtccttattataagaaacaattaacttttttggttcattgtgtaagtgatgtatttaaactatatttacaataagatacattaat 28605664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 596 - 687
Target Start/End: Original strand, 10145218 - 10145309
Alignment:
Q  596 ccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| |||||||||||||||| ||||   ||||||| |||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  10145218 ccctccgatccttattataagaaataattgatttttttgattcatcatataagtgatgtatctagtctatatttacaataagatacattaat 10145309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 12217494 - 12217585
Alignment:
Q  597 cctccggtccttattataagaaacaatt-agcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||| |||||||| |  ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12217494 cctccgatccttattataaaaaacaattgattttttttggtttattgtataagtgatgtatctagtctatatttacaataagatacattaat 12217585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 12605612 - 12605704
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| |||||||||||||||||||||   ||||||  ||||||   |||||||||||| | ||||||||||||||||||||||||||||    
T  12605612 tccctccgttccttattataagaaacaattgattttttttattcattacgtaagtgatgtatttagtctatatttacaataagatacattaat 12605704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 595 - 670
Target Start/End: Complemental strand, 2913479 - 2913404
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    |||||||||||||||||||||| |||||||  |||||| | |||||||||||||| |||||||| |||||||||||    
T  2913479 tccctccggtccttattataagcaacaattgactttttaggttcattgtataagtaatgtatctagtctatattta 2913404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 595 - 686
Target Start/End: Complemental strand, 23916273 - 23916182
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaa 686  Q
    ||||||||||||||||||||||||||||||  |||||| | |||||||| || ||||| |||||  |||||||||| ||  |||||||||||    
T  23916273 tccctccggtccttattataagaaacaattgactttttagattcattgtgtatgtgatatatctaatctatatttataacgagatacattaa 23916182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 8265116 - 8265026
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||||||| | ||   |||||   |||||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  8265116 cctccgttccttattataagaaaaagttgattttttaagttcattgtgtaagtgatgtatctagtctatatttataacaagatacattaat 8265026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 681
Target Start/End: Complemental strand, 17599601 - 17599513
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtata--agtgatgtatctggtctatatttacaataagatac 681  Q
    ||||| |||||||||||| || ||| ||||  |||||||| |||||||||||  |||  ||||||| ||||||||||||||||||||||    
T  17599601 tcccttcggtccttattacaataaataattgacttttttgattcattgtatataagttgtgtatctagtctatatttacaataagatac 17599513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 3065029 - 3064937
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||  |||||||||| | ||  |||||||| ||||||| |||| || ||||| ||||||||||||   | |||||||||||||    
T  3065029 tccctccggtcctatttataagaaatattttacttttttgattcattgcataaatggtgtatttggtctatattttatacaagatacattaat 3064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 9343262 - 9343174
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||| |||||||||  |||||    || ||||| ||| | |||||||| ||||||||||| || |||||||||||||    
T  9343262 tccggtccttattataggaaacaattgacttttcaaatttattgtgtaaataatgtatctagtctatatttataacaagatacattaat 9343174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 604 - 666
Target Start/End: Complemental strand, 24986069 - 24986007
Alignment:
Q  604 tccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctata 666  Q
    |||||||||||||| ||||||  |||||| | ||||||| |||| |||||||| |||||||||    
T  24986069 tccttattataagagacaattcactttttaggttcattggataattgatgtatatggtctata 24986007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 669
Target Start/End: Original strand, 33119906 - 33119980
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattt 669  Q
    ||||| |||||||  |||||||||||| ||  ||| |||| |||||||||||| || ||||| ||||||||||||    
T  33119906 tcccttcggtcctatttataagaaacatttgacttctttgattcattgtataaatgttgtatttggtctatattt 33119980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 598 - 687
Target Start/End: Original strand, 27302084 - 27302173
Alignment:
Q  598 ctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  27302084 ctccggtctttattataagaaagaattaacttttttggttcattgtataagtgatgtatctagtctatatttacaattagatacattaat 27302173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 601 - 687
Target Start/End: Complemental strand, 16123896 - 16123810
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  16123896 cggtccttattataaaaaacaattaacttttttggttcattgtataagtaatgtatctagtctatatttacaataagatatattaat 16123810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 43901725 - 43901635
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| || |||||||||| |||||||||||||||||    
T  43901725 cctccggtccttattataagaaacaattaacttttttggttcattgtgtaaatgatgtacctagtctatattttcaataagatacattaat 43901635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 53284460 - 53284370
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||   ||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  53284460 cctccggtccttattataagaaacaattgatttttttggtttattgtataagtgatgtatctagtctacatttacaataagatacattaat 53284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 45113736 - 45113828
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| | |||||||||||||||||||||   ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  45113736 tccctctgatccttattataagaaacaattgatttttttggttcattgtgtaagtgatgtatctagtctatatttacaataagatacattaat 45113828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 605 - 687
Target Start/End: Original strand, 50100206 - 50100288
Alignment:
Q  605 ccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  50100206 ccttattataagaaacaattgacttttttagttcattgtataagtgatgtatctagtctatatttataataagatacgttaat 50100288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 31376177 - 31376269
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||| ||  |||||| | |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  31376177 tccctccggtccttattataagaaacatttgactttttaggttcattatgtaagtgatgtatctagtctatatttataagaagatacattaat 31376269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 595 - 683
Target Start/End: Complemental strand, 2544605 - 2544516
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat-atttacaataagatacat 683  Q
    |||||||||||||||||| |||||||||||  |||||| | ||||||||||||||||||||| |||||||| ||||| || |||||||||    
T  2544605 tccctccggtccttattacaagaaacaattgactttttagattcattgtataagtgatgtatttggtctataatttataacaagatacat 2544516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 590 - 687
Target Start/End: Original strand, 39616908 - 39617005
Alignment:
Q  590 actattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||||||||||||||||| ||  |||||  | |||||| | |||||||||||||| ||||||||||| || |||||||||||||    
T  39616908 actactccctccggtccttattataagaaacatttgacttttaaggttcattatgtaagtgatgtatctagtctatatttataacaagatacattaat 39617005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 53703877 - 53703784
Alignment:
Q  595 tccctccggtccttattataagaaacaattag-cttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| || | | | |||| | |||||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  53703877 tccctccggtccttattataagaaaaaagttgaccttttaggttcattgtgtaagtgatgtatctagtctatatttataacaagatacattaat 53703784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Complemental strand, 8769279 - 8769188
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||| | ||| ||||||   |||||||| ||||||||||||||  |||||||||| || |||||||||||||    
T  8769279 tccctccggtccttattataagaaa-agttaactttttaagttcattgtgtaagtgatgtatctaatctatatttataacaagatacattaat 8769188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 595 - 666
Target Start/End: Original strand, 42896144 - 42896215
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctata 666  Q
    ||||||||||| |||||||||||| |||||  |||||| | ||||||| |||| ||||||||||||||||||    
T  42896144 tccctccggtctttattataagaagcaattcactttttaggttcattgaataactgatgtatctggtctata 42896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 598 - 687
Target Start/End: Original strand, 48643609 - 48643698
Alignment:
Q  598 ctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||||||  |||||| | || || || ||||| |||||||| ||||||||||| ||  | ||||||||||    
T  48643609 ctccggtccttattataagaaacaattgactttttaggttaatcgtgtaagtaatgtatctagtctatatttataacgaaatacattaat 48643698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 51517103 - 51517030
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  51517103 tccctccggtcctatttataagaaacatttgacttttttggttcattgcataaatgatgtatttggtctatatt 51517030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 666
Target Start/End: Complemental strand, 21663032 - 21662961
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctata 666  Q
    ||||||||||| |  |||||||||||| ||| |||||||| ||||||| |||| |||||||| |||||||||    
T  21663032 tccctccggtcttatttataagaaacatttaacttttttgattcattgcataaatgatgtatttggtctata 21662961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 612 - 687
Target Start/End: Complemental strand, 21944418 - 21944343
Alignment:
Q  612 ataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||   ||||||| ||| |||| |||||| ||||||| |||||||| |||| ||||||||||||||    
T  21944418 ataagaaacaattgatttttttggttccttgtgtaagtggtgtatctagtctatatctacactaagatacattaat 21944343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 50659951 - 50660014
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    |||||| |||||||||||| ||||||||||   ||||||| |||||||| ||||||||||||||    
T  50659951 tccctctggtccttattattagaaacaattgatttttttggttcattgtgtaagtgatgtatct 50660014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 53703732 - 53703795
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| | |||| | ||||||||    
T  53703732 tccctccggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatct 53703795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 647
Target Start/End: Original strand, 2544433 - 2544491
Alignment:
Q  589 tactattccctccggtccttattataagaaacaattagcttttttgtttcattgtataa 647  Q
    ||||| ||||||||||||||||||||||||||||||  |||||| | ||||||| ||||    
T  2544433 tactactccctccggtccttattataagaaacaattgactttttaggttcattgaataa 2544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 24489317 - 24489407
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| |||||||||||||| ||| ||||  |||||||  || ||| | || ||||||||||| || ||||||||| |||||||||||||||    
T  24489317 cctctggtccttattataaaaaataattgacttttttagtttattttgtaggtgatgtatctagtttatatttactataagatacattaat 24489407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 12064911 - 12064984
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| || | |||||||| |||||||||||    
T  12064911 tccctccggtcctacttataagaaacattttacttttttgattcattgcattaatgatgtatttggtctatatt 12064984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 658
Target Start/End: Complemental strand, 31376321 - 31376258
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||| | |||| | ||||||||    
T  31376321 tccctccggtccttattacaagaaacaattgacttttttggttcatagaataattaatgtatct 31376258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 658
Target Start/End: Complemental strand, 39617057 - 39616994
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatct 658  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||| | |||| | ||||||||    
T  39617057 tccctccggtccttattacaagaaacaattgacttttttggttcatagaataattaatgtatct 39616994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 510
Target Start/End: Original strand, 40417622 - 40417677
Alignment:
Q  455 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 510  Q
    |||| ||| |||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  40417622 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaa 40417677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 44118182 - 44118277
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||  |||||||| |||| | ||  |||||| | |||||||| ||| |||||||||| ||||||||||| || || ||||||||||    
T  44118182 tattacctccggtttttattataggaaatatttgactttttagattcattgtgtaaatgatgtatctagtctatatttataacaatatacattaat 44118277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 592 - 622
Target Start/End: Original strand, 25294779 - 25294809
Alignment:
Q  592 tattccctccggtccttattataagaaacaa 622  Q
    |||||||||||||||||||||||||||||||    
T  25294779 tattccctccggtccttattataagaaacaa 25294809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 645 - 687
Target Start/End: Original strand, 48346502 - 48346544
Alignment:
Q  645 taagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||| ||||||||||| || |||||||||||||    
T  48346502 taagtgatgtatctagtctatatttataacaagatacattaat 48346544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 661
Target Start/End: Original strand, 53441909 - 53441975
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggt 661  Q
    |||||||||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| ||||    
T  53441909 tccctccggtcctatttataagaaacattttacttttttgattcattgcataaatgatgtatttggt 53441975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 624
Target Start/End: Complemental strand, 19227454 - 19227425
Alignment:
Q  595 tccctccggtccttattataagaaacaatt 624  Q
    ||||||||||||||||||||||||||||||    
T  19227454 tccctccggtccttattataagaaacaatt 19227425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 667
Target Start/End: Complemental strand, 19899756 - 19899687
Alignment:
Q  598 ctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatat 667  Q
    |||||||||||||||||| ||||||||  || | | | |||||||| ||| |||||||||| ||||||||    
T  19899756 ctccggtccttattataaaaaacaattgactctataggttcattgtgtaaatgatgtatctagtctatat 19899687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 670
Target Start/End: Original strand, 25313286 - 25313355
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    ||||||||||||||| ||| ||||   ||||| | |||||||| |||||||||||| | |||||||||||    
T  25313286 cggtccttattataaaaaataattgattttttaggttcattgtgtaagtgatgtatttagtctatattta 25313355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 25613 - 25708
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| || ||| |||||||||||||||| ||||||||||| ||||||||||||||||    
T  25613 tatttcctccggtccttattataaaaaacaattaacttttttggtttattatataagtgatgtatctagtctatatttataataagatacattaat 25708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 36103395 - 36103487
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||| ||||||||| | |||||  |||||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  36103395 tccctccggtccttattataataaacaattaacatttttagttcattgtgtaagtgatgtatctagactatatttacaataagatacattaat 36103487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 597 - 685
Target Start/End: Original strand, 40534517 - 40534605
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacatta 685  Q
    ||||||||||||||||||||||||||||   ||||||  |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  40534517 cctccggtccttattataagaaacaattgatttttttagttcattgtataaatgatgtatctagtctatatttacaataagatacatta 40534605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 45076491 - 45076396
Alignment:
Q  592 tattccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| |||||||||||||||||| ||||||||  |||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||||    
T  45076491 tattctctccggtccttattataaaaaacaattgacttttttggttcattgtgtaagtgatgtatctagtctatatgtacaataaaatacattaat 45076396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 619 - 687
Target Start/End: Original strand, 23464522 - 23464590
Alignment:
Q  619 acaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23464522 acaattaacttttttggttcattgtataagagatgtatctagtctatatttacaataagatacattaat 23464590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 604 - 687
Target Start/End: Original strand, 15239703 - 15239786
Alignment:
Q  604 tccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||   ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  15239703 tccttattataagaaacaattgattttgttggttcattgtgtaagtgatgtatctagtctatatttacaataagatatattaat 15239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 602 - 687
Target Start/End: Original strand, 28143752 - 28143839
Alignment:
Q  602 ggtccttattata--agaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||  ||||||||||   ||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  28143752 ggtccttattatattagaaacaattgatttttttggttcattgtgtaagtgatgtatctagtctatatttataataagatacattaat 28143839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 3365279 - 3365369
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||| |||| ||||||||||||| | ||| |||||| | |||||||||||||||||||||||  |||||||||| || |||||| ||||||    
T  3365279 cctctggtctttattataagaaaaatttaactttttaggttcattgtataagtgatgtatctaatctatatttataacaagatatattaat 3365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 513 - 569
Target Start/End: Original strand, 29463290 - 29463346
Alignment:
Q  513 ggataaatgtctatcatgttactatcatatcatatctttatctattttctaattata 569  Q
    |||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||    
T  29463290 ggataaatgtttatcatgtcactatcatatcttatcttcatctattttctaattata 29463346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 6971714 - 6971624
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| ||||||||||||||||||| ||  |||||| | |||||||| ||| ||||||||||  |||||||||| || || ||||||||||    
T  6971714 cctcctgtccttattataagaaacatttgactttttaggttcattgtgtaaatgatgtatctaatctatatttataacaatatacattaat 6971624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 687
Target Start/End: Original strand, 25795242 - 25795332
Alignment:
Q  597 cctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||||||||  |||||| | || || || ||||| |||||||| ||||||||||| ||  | ||||||||||    
T  25795242 cctccggtccttattataagaaacaattgactttttaggttaatcgtgtaagtaatgtatctagtctatatttataacgaaatacattaat 25795332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 607 - 687
Target Start/End: Complemental strand, 27306843 - 27306765
Alignment:
Q  607 ttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||   ||||||| || ||||| |||||   |||||| ||||||||||||||||||||||||||||    
T  27306843 ttattataagaaacaattgatttttttggtttattgtgtaagtc--gtatctagtctatatttacaataagatacattaat 27306765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 606 - 687
Target Start/End: Original strand, 27311590 - 27311671
Alignment:
Q  606 cttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||  |||||| | ||||||||| || |||| ||||| ||||||||||| || ||||||| |||||    
T  27311590 cttattataagaaacaattgactttttaggttcattgtacaaatgatatatctagtctatatttataacaagatacgttaat 27311671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 595 - 669
Target Start/End: Complemental strand, 12962851 - 12962777
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattt 669  Q
    |||||| ||||||  |||||||||||| ||  |||||||| ||||||| |||| |||||||| ||||||||||||    
T  12962851 tccctctggtcctatttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatattt 12962777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 670
Target Start/End: Original strand, 38448946 - 38449015
Alignment:
Q  601 cggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    |||||||||| |||| ||||||||  ||||||   |||||||| ||||||||||||||| ||||||||||    
T  38448946 cggtccttatcataaaaaacaattgactttttatgttcattgtgtaagtgatgtatctgatctatattta 38449015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 604 - 687
Target Start/End: Complemental strand, 11724408 - 11724324
Alignment:
Q  604 tccttattataagaaacaattag-cttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||||||||||||||||||||| |||| | | || ||||| ||||| || ||||| ||||||||||| ||  ||||||||||||    
T  11724408 tccttattataagaaacaattagactttatagatttattgtgtaagtaatatatctagtctatatttataacgagatacattaat 11724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 687
Target Start/End: Complemental strand, 41464819 - 41464768
Alignment:
Q  636 ttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||| |||||||||||||| ||||||||||| ||  ||||||||||||    
T  41464819 ttcattgtgtaagtgatgtatctagtctatatttataacgagatacattaat 41464768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 604 - 670
Target Start/End: Original strand, 11687486 - 11687552
Alignment:
Q  604 tccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    |||||||||||||||||||||  |||| |   || ||||| |||||||||||||| |||||||||||    
T  11687486 tccttattataagaaacaattgactttataaatttattgtgtaagtgatgtatctagtctatattta 11687552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 610 - 668
Target Start/End: Original strand, 41153128 - 41153186
Alignment:
Q  610 ttataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||| ||  |||||||| ||||||| |||| |||||||| |||||||||||    
T  41153128 ttataagaaacatttgacttttttgattcattgcataaatgatgtatttggtctatatt 41153186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45034543 - 45034473
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45034543 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45034473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45571175 - 45571105
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45571175 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45571105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45574842 - 45574772
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45574842 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45574772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45578509 - 45578439
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45578509 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45578439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45582176 - 45582106
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45582176 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45582106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45585843 - 45585773
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45585843 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45585773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45589510 - 45589440
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45589510 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45589440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45593177 - 45593107
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45593177 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45593107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45596844 - 45596774
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45596844 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45596774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45600511 - 45600441
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45600511 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45600441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45604178 - 45604108
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45604178 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45604108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45607845 - 45607775
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45607845 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45607775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45611512 - 45611442
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45611512 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45611442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 45615179 - 45615109
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctat 665  Q
    |||||||||||||   ||||||||||||||  |||||||| ||||||| |||  |||||||| ||||||||    
T  45615179 tccctccggtcctatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 45615109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 610 - 687
Target Start/End: Original strand, 4410794 - 4410871
Alignment:
Q  610 ttataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||| ||| | |||||| || |||| |||| |||||||| || |||||||||  || |||||||||||||    
T  4410794 ttataagaaacatttaacctttttgatttattgcataaatgatgtatttgatctatattttaaacaagatacattaat 4410871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 603 - 687
Target Start/End: Original strand, 9373404 - 9373488
Alignment:
Q  603 gtccttattataagaaacaatt-agcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| ||||||||||||||| || ||||  |||| ||| | |||||||||||| | |||||||||||||| ||||||| |||||    
T  9373404 gtccttgttataagaaacaattgagtttttaagttt-attatgtaagtgatgtatgtagtctatatttacaacaagatacgttaat 9373488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 12486138 - 12486065
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||| ||||||  ||| |||||||||||  |||||| | ||||||| |||| |||||||| |||||||||||    
T  12486138 tccctctggtcctatttacaagaaacaattgactttttagattcattgaataattgatgtatttggtctatatt 12486065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 609 - 670
Target Start/End: Complemental strand, 14329270 - 14329209
Alignment:
Q  609 attataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    ||||||||| ||||||  ||| || | |||||||| ||||||||||||||| ||||||||||    
T  14329270 attataagagacaattgacttgttaggttcattgtgtaagtgatgtatctgatctatattta 14329209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 25795384 - 25795323
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtat 656  Q
    |||||||||||||||||| |||||||||||  |||||| | ||||||| |||| | ||||||    
T  25795384 tccctccggtccttattacaagaaacaattgactttttagattcattgaataattaatgtat 25795323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 582 - 619
Target Start/End: Complemental strand, 39063803 - 39063766
Alignment:
Q  582 ctaaatgtactattccctccggtccttattataagaaa 619  Q
    ||||||||| || |||||||||||||||||||||||||    
T  39063803 ctaaatgtagtactccctccggtccttattataagaaa 39063766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 26588 - 26680
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||||||||||  |||  |||||| | |||||| | |||||||||||||| |||||||||||||| |||||||||||||    
T  26588 tccctccggtccttattataagaaaggattgactttttaggttcattatgtaagtgatgtatctagtctatatttacaacaagatacattaat 26680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 112825 - 112917
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||| |||||||||||||||||||||||  | |||| | ||||||||| || ||||||||||  |||||||||| || |||||||||||||    
T  112825 tccctcgggtccttattataagaaacaattgacgttttaggttcattgtacaaatgatgtatctaatctatatttataacaagatacattaat 112917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 598 - 687
Target Start/End: Original strand, 40195 - 40285
Alignment:
Q  598 ctccggtccttattataagaaacaattagctttttt-gtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||||||||| ||| || | | |||||| | |||||||| |||||||||||||| |||||||||||||| |||||| ||||||    
T  40195 ctccggtccttattataaaaaaaaaattgattttttaggttcattgtgtaagtgatgtatctagtctatatttacaacaagatatattaat 40285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 606 - 670
Target Start/End: Complemental strand, 3944 - 3880
Alignment:
Q  606 cttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    |||||||||||||||||||  |||||| | |||||||| |||||||||||||| |||||||||||    
T  3944 cttattataagaaacaattgactttttaggttcattgtgtaagtgatgtatctagtctatattta 3880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 642
Target Start/End: Original strand, 3811 - 3858
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattg 642  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||    
T  3811 tccctccggtccttattataagaaacaattgacttttttgattcattg 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 604 - 670
Target Start/End: Original strand, 3251 - 3317
Alignment:
Q  604 tccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatattta 670  Q
    |||||||||||||||||||||  ||||||   |||||||| |||||||||||||| |||||||||||    
T  3251 tccttattataagaaacaattgactttttatgttcattgtgtaagtgatgtatctagtctatattta 3317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 11330 - 11386
Alignment:
Q  514 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 570  Q
    ||||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  11330 gataaatgtttatcatgtcactatcatactatatctttatcaattttctaattatat 11386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 12888 - 12804
Alignment:
Q  599 tccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacat 683  Q
    ||||||||||||||||||||||| ||  |||||| | |||||| | |||||||||||||| ||||| ||||| ||  ||||||||    
T  12888 tccggtccttattataagaaacatttgactttttaggttcattatttaagtgatgtatctagtctacatttataacgagatacat 12804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 687
Target Start/End: Complemental strand, 12350 - 12267
Alignment:
Q  604 tccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    |||||||||||| ||| ||||  |||||| | || ||||| | |||||||||||| | |||||||||||| ||||||| |||||    
T  12350 tccttattataaaaaataattgactttttaggtttattgtgttagtgatgtatctagcctatatttacaagaagatacgttaat 12267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 510
Target Start/End: Original strand, 11935 - 11990
Alignment:
Q  455 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 510  Q
    |||| ||| |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  11935 caaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaa 11990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 19433 - 19348
Alignment:
Q  603 gtccttattataagaaacaattagcttttttg-tttcattgtataagtgatgtatctggtctatatttacaataagatacattaat 687  Q
    ||||| ||||| | ||||||||  |||||||| ||| ||| | |||||||||||  | ||||||||||||||||||||| ||||||    
T  19433 gtcctgattattataaacaattgacttttttggttttattttgtaagtgatgtaagtagtctatatttacaataagatatattaat 19348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 156770 - 156843
Alignment:
Q  595 tccctccggtccttattataagaaacaattagcttttttgtttcattgtataagtgatgtatctggtctatatt 668  Q
    |||||||||||||  |||||||||||| ||| |||||||  ||||||| ||||  ||| ||| |||||||||||    
T  156770 tccctccggtcctatttataagaaacatttaacttttttaattcattgcataaacgatatatttggtctatatt 156843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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