View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-3 (Length: 430)
Name: NF3037R-Insertion-3
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 38580209 - 38579785
Alignment:
| Q |
9 |
ctggcttccttatttctcacgcttatgcaactatttacttcaatgtcc-gtaatttataattgattgcagaacannnnnnnnnnnnnn-cattctatcct |
106 |
Q |
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| T |
38580209 |
ctggcttccttatttctcacgcttatgcaactatttacttcaatgtcttgtaatttataattgattgcagaacatttttttacttttttcattctatcct |
38580110 |
T |
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| Q |
107 |
tctattgcaggtcaaggatcctatccatcaaattgtgaagcgtcagagatcgcaggctccatgaacctgatttatggattgctcagtatttgtggatgac |
206 |
Q |
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| T |
38580109 |
tctattgcaggtcaaggatcctatccatcaaagtgtgaagcgtcagagatcacaggctccatgaacctgatttatggattgctcagtatttgtggatgac |
38580010 |
T |
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| Q |
207 |
acaaacaaaaactgatacgcatctcaaacttatataccatacaattaagcatttagtaatgcatacagtcatagagacaatgctttgtaagaaaaatctt |
306 |
Q |
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| T |
38580009 |
acaaacaaaaactgatacgcatctcaaacttatataccatacaattaagcatttagtaatgcatacagtcatagagacaatgctttgtaagaaaaatctt |
38579910 |
T |
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| Q |
307 |
tagttgctttcttgtccgacttctttgttactggcttacgccaagtattgctattttactt-caaggatttttatatttaaaaattttagttcataaaac |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38579909 |
tagttgctttcttgtccgacttctttgttactggcttacgccaagtattgctattttacttccaaggatttttatatttaaaaattttagttcataaaac |
38579810 |
T |
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| Q |
406 |
tgctcccagcgccttatcgtccagc |
430 |
Q |
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| T |
38579809 |
tgctctcagcgccttatcgtccagc |
38579785 |
T |
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