View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-4 (Length: 446)
Name: NF3037R-Insertion-4
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 236 - 446
Target Start/End: Complemental strand, 4212692 - 4212482
Alignment:
| Q |
236 |
cgaatgcgaatgcgaatgcagaaacaaataataccaaactttatatatttatattaatttgatatgatatttaatatttgaaagagacgggtagatggga |
335 |
Q |
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| T |
4212692 |
cgaatgcgaatgcgaatgcagaaacaaataataccaaactttatatatttatattaatttgatatgatatttaatatttgaaagagacgggtagat---- |
4212597 |
T |
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| Q |
336 |
atgggaggataatttcgaagaaagttctggttattaatgttaaattactggaatatccctttcttacttaccaa-------gtaatagtaatccaaattt |
428 |
Q |
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| T |
4212596 |
--gggaggataatttcgaagaaagttctggttattaatgtt-aattactagaatgtccctttcttacttaccaagtaatatgtaatagtaatccaaattt |
4212500 |
T |
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| Q |
429 |
ggctttgtcttgttttca |
446 |
Q |
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| T |
4212499 |
ggctttgtcttgttttca |
4212482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 4212833 - 4212725
Alignment:
| Q |
93 |
cctgtttgaggtgattctgaacgcgaggagaaatctgattgaagtttttgagagtattgaaattccatcgaggtgttgaatcgaagaacgaagcgaatga |
192 |
Q |
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| T |
4212833 |
cctgtttgaggtgattctgaacgcgaggagaaatctgattgaagtttttgagagtattgaaattccatcgaggtgttgaatcgaagaacgaagcgaatga |
4212734 |
T |
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| Q |
193 |
atccatggc |
201 |
Q |
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| T |
4212733 |
atccatggc |
4212725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 31161475 - 31161581
Alignment:
| Q |
93 |
cctgtttgaggtgattctgaacgcgaggagaaatctgattgaagtttttgagagtattgaaattccatcgaggtgttgaatcgaagaacgaagcgaatga |
192 |
Q |
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| T |
31161475 |
cctgtttgaggtgattctaaacgctgggagaaatctgattgaagtttttgagagtattgaaattccatcgaggtgttgaatcgaagaacgaagcgaatga |
31161574 |
T |
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| Q |
193 |
atccatg |
199 |
Q |
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| T |
31161575 |
atccatg |
31161581 |
T |
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