View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-5 (Length: 533)
Name: NF3037R-Insertion-5
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 127 - 530
Target Start/End: Original strand, 9624916 - 9625317
Alignment:
| Q |
127 |
gagtactaaaaaatatgcagcaactgcagcttgaacggtctcttttgttttgcttctttagaatgaatctatcctttgttataagtcccacatcggtctg |
226 |
Q |
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| T |
9624916 |
gagtactaaaaaatatgcagcaactgcagcttgaacggtctcttttgttttgcttctttagaatgaatctatcctttgttataagtcccacatcggtctg |
9625015 |
T |
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| Q |
227 |
cgtggagtgaatggtatagaccttgtgatataaaaagaacaaaccacattacattagatccaaacgaaaacgaagttaaagttcatccgcacttttactt |
326 |
Q |
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| T |
9625016 |
cttagagtgaacggtatagaccttgtgatataaaaagaacaaaccacataatattagatccaaacgcaaataaagttaaagttcatctacgcttttactt |
9625115 |
T |
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| Q |
327 |
gttacttgaacttggcttaacgcatgtttgaaatagtcatgtgaatgtgaattaaggtcaaaaggtcacagatctatgcgttaacatggctatcatcatg |
426 |
Q |
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| T |
9625116 |
gttacttgaacttggcttaacgcatgtttgaaatagtcatgtgaatgtgaattaaggtcaaaaggtcacagatctatgctttaacatggctatcatcatg |
9625215 |
T |
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| Q |
427 |
ttttaagctagttcaagtaatacatttaagccggttcaagaaataactttatataaaggaaattaagagaaatgttagggtcatattttctaagatagaa |
526 |
Q |
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| T |
9625216 |
ttttaagctagttcaagtaatacttttaagccagttcaagaaataac--tatataaaggaaaataagagaaatgttagggtcatattttctaagatagaa |
9625313 |
T |
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| Q |
527 |
gatg |
530 |
Q |
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| T |
9625314 |
gatg |
9625317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 9621183 - 9621314
Alignment:
| Q |
145 |
agcaactgc-agcttgaacggtctcttttgttttgcttctttagaatgaatctatcctttgtta--taagtcccacatcggtctgcgtggagtgaatggt |
241 |
Q |
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| T |
9621183 |
agcaactgccagcctgaacggtcttttttgttttgcttctttagaatggatctgtcctttgttatgtaagtcccacatcggtttgtttagagtgattagt |
9621282 |
T |
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| Q |
242 |
atagaccttgtgatataaaaagaacaaaccac |
273 |
Q |
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| T |
9621283 |
gtagactttgtggtataaaaagaacaaaccac |
9621314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 9622905 - 9623000
Alignment:
| Q |
134 |
aaaaaatatgcagcaactg-cagcttgaacggtctcttttgttttgcttctttagaatgaatctatcctttgttataagtcccacatcggtctgcg |
228 |
Q |
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| T |
9622905 |
aaaaaatatgatgcaactgtcagcttgaacggtcttttttgtttttcttctttagactgaatttgtcccatgttttgtgtcccacatcggtctgcg |
9623000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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