View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-7 (Length: 750)
Name: NF3037R-Insertion-7
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-7 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 234 - 721
Target Start/End: Complemental strand, 8349622 - 8349135
Alignment:
| Q |
234 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaagaaataccaagactaaaattctattcataatatctatatca |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8349622 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatatattagctagaaagaaatcccaagactaaaattctattcataatatctatatca |
8349523 |
T |
|
| Q |
334 |
ctcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagca |
433 |
Q |
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| T |
8349522 |
ctcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagca |
8349423 |
T |
|
| Q |
434 |
ttcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagag |
533 |
Q |
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| T |
8349422 |
ttcaataagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagag |
8349323 |
T |
|
| Q |
534 |
cgtgtcacaaccattgatgcacattgtaccgaatcagcaacttaccgtccatgatttgctgccgaatggatnnnnnnntggaatttagatgtgcttcagc |
633 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
8349322 |
cgtgtcacaaccattgatgcacattgtaccgaatcagcaatttaccgtccatgatttgctgccgaatggataaaaaagtggaaattagatgtgcttcagc |
8349223 |
T |
|
| Q |
634 |
agttcagctgtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
721 |
Q |
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| T |
8349222 |
agttcagctgtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
8349135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 221 - 602
Target Start/End: Original strand, 11993658 - 11994025
Alignment:
| Q |
221 |
aattgtagaaatgttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaagaaataccaagactaaaattctattcat |
320 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||| ||| |||| ||||||||||||| ||||||| |
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| T |
11993658 |
aattgtagaaatgttttagttatacacatatcaacagtggtggtaaaattgtagaaatattttagctacaaacaaatcccaagactaaaat--tattcat |
11993755 |
T |
|
| Q |
321 |
a-atatctatatcactcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatctt |
419 |
Q |
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|| || | ||||| || || |||||||| | || |||||||||||||||||||| ||| ||||| || |||||| |||| |
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| T |
11993756 |
ggatgactttctcacttagtag---tgacccac----------caaatgtaaatcacttgaactaatgtttttggaagatagtttttttaaacttctctt |
11993842 |
T |
|
| Q |
420 |
acgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttgg |
519 |
Q |
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|| ||| |||||||||||| ||||| || |||||| |||| |||| || |||||||||||||||||| ||||| ||||||| ||| |||||| |||| |
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| T |
11993843 |
acaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtacaagatggaaggttggtagtggagagaatatccgggtgttttatgacaattgg |
11993941 |
T |
|
| Q |
520 |
tt-agcaaacaagagcgtgtcacaaccattgatgcacattgtaccgaatcagcaacttaccgtccatgatttgctgccgaatgg |
602 |
Q |
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|| ||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||||| |
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| T |
11993942 |
tttagcaaacaagagcatggaacaaccattgatgcacattgtactgaatcagcaacttaaagtccgagatttgctgcagaatgg |
11994025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 44799728 - 44799806
Alignment:
| Q |
9 |
gtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttcataaagttcttcatagaaatttaag |
87 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||| |||||||| |
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| T |
44799728 |
gtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttgataaagttctgcataggaatttaag |
44799806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 44614647 - 44614593
Alignment:
| Q |
203 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
257 |
Q |
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|||||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
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| T |
44614647 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44614593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 44793922 - 44793976
Alignment:
| Q |
203 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
257 |
Q |
| |
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|||||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
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|
| T |
44793922 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44793976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 27216 - 27253
Alignment:
| Q |
205 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
242 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
27216 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
27253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 171576 - 171539
Alignment:
| Q |
205 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
242 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
171576 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
171539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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