View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037R-Insertion-8 (Length: 795)

Name: NF3037R-Insertion-8
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037R-Insertion-8
NF3037R-Insertion-8
[»] chr4 (25 HSPs)
chr4 (9-229)||(4623257-4623477)
chr4 (277-533)||(4622952-4623201)
chr4 (289-444)||(4598518-4598673)
chr4 (36-184)||(4598799-4598947)
chr4 (282-444)||(25015751-25015913)
chr4 (606-683)||(4622798-4622875)
chr4 (282-444)||(25037031-25037193)
chr4 (80-171)||(25037315-25037406)
chr4 (78-171)||(25016032-25016125)
chr4 (606-684)||(4634232-4634311)
chr4 (606-684)||(9661802-9661881)
chr4 (620-684)||(1657656-1657721)
chr4 (620-684)||(16991835-16991900)
chr4 (613-684)||(11817028-11817100)
chr4 (116-160)||(25002270-25002314)
chr4 (644-683)||(44021652-44021691)
chr4 (642-685)||(46729004-46729047)
chr4 (78-160)||(25044895-25044977)
chr4 (642-684)||(41486561-41486603)
chr4 (625-681)||(14542601-14542658)
chr4 (620-684)||(28588524-28588589)
chr4 (620-682)||(54420800-54420863)
chr4 (642-684)||(3673609-3673651)
chr4 (757-795)||(4622686-4622724)
chr4 (648-681)||(4959664-4959697)
[»] chr2 (27 HSPs)
chr2 (277-444)||(18805793-18805960)
chr2 (17-208)||(18805534-18805725)
chr2 (606-684)||(3390381-3390460)
chr2 (606-684)||(25771394-25771473)
chr2 (623-684)||(6089859-6089921)
chr2 (606-684)||(27024225-27024304)
chr2 (606-684)||(40125338-40125417)
chr2 (614-683)||(3464916-3464986)
chr2 (613-683)||(25237413-25237484)
chr2 (614-671)||(31263053-31263111)
chr2 (642-684)||(37883639-37883681)
chr2 (620-684)||(10589001-10589066)
chr2 (641-682)||(15674062-15674103)
chr2 (620-684)||(25516457-25516522)
chr2 (620-684)||(41176825-41176890)
chr2 (620-684)||(44167795-44167860)
chr2 (645-684)||(7640442-7640481)
chr2 (641-684)||(16880045-16880088)
chr2 (642-684)||(26491289-26491331)
chr2 (620-685)||(43566840-43566905)
chr2 (620-684)||(3602948-3603013)
chr2 (648-681)||(9715634-9715667)
chr2 (641-682)||(17037737-17037778)
chr2 (620-684)||(25623131-25623196)
chr2 (620-684)||(27191421-27191486)
chr2 (620-684)||(27841235-27841300)
chr2 (642-683)||(42105839-42105880)
[»] chr5 (12 HSPs)
chr5 (606-684)||(31645778-31645857)
chr5 (606-684)||(6887264-6887343)
chr5 (620-684)||(34894002-34894067)
chr5 (606-684)||(33486656-33486735)
chr5 (620-684)||(28618567-28618632)
chr5 (643-684)||(29310435-29310476)
chr5 (642-684)||(41554472-41554514)
chr5 (612-680)||(41988139-41988208)
chr5 (302-386)||(30363051-30363135)
chr5 (642-684)||(19646127-19646169)
chr5 (649-686)||(2415393-2415430)
chr5 (612-684)||(41357993-41358066)
[»] chr1 (12 HSPs)
chr1 (606-681)||(27469821-27469897)
chr1 (606-684)||(22344998-22345077)
chr1 (612-686)||(52839378-52839453)
chr1 (620-682)||(6212974-6213037)
chr1 (606-671)||(14717341-14717407)
chr1 (641-683)||(44514077-44514119)
chr1 (620-684)||(30853869-30853934)
chr1 (612-684)||(38646539-38646612)
chr1 (614-684)||(13691844-13691916)
chr1 (642-686)||(52839507-52839551)
chr1 (643-684)||(5832220-5832261)
chr1 (620-684)||(33703595-33703660)
[»] chr7 (16 HSPs)
chr7 (606-684)||(40775216-40775295)
chr7 (641-684)||(28015341-28015384)
chr7 (615-682)||(41748589-41748657)
chr7 (642-684)||(24045318-24045360)
chr7 (642-684)||(47749720-47749762)
chr7 (642-683)||(16263373-16263414)
chr7 (620-684)||(24470358-24470423)
chr7 (620-684)||(24475306-24475371)
chr7 (648-681)||(47156388-47156421)
chr7 (642-682)||(23732481-23732521)
chr7 (645-684)||(30992909-30992948)
chr7 (623-684)||(38649444-38649506)
chr7 (613-669)||(23177683-23177740)
chr7 (648-681)||(25855309-25855342)
chr7 (620-681)||(43483558-43483619)
chr7 (620-684)||(49166890-49166955)
[»] chr3 (14 HSPs)
chr3 (606-684)||(1165482-1165561)
chr3 (620-684)||(20201144-20201209)
chr3 (620-684)||(20203326-20203391)
chr3 (606-684)||(22844000-22844079)
chr3 (606-684)||(42106060-42106139)
chr3 (606-684)||(43029632-43029711)
chr3 (623-684)||(50460160-50460222)
chr3 (612-684)||(1220301-1220374)
chr3 (620-684)||(41882494-41882559)
chr3 (620-684)||(50519753-50519818)
chr3 (606-684)||(913404-913483)
chr3 (626-684)||(1806546-1806605)
chr3 (620-685)||(43839602-43839667)
chr3 (620-684)||(22286835-22286900)
[»] chr8 (12 HSPs)
chr8 (620-684)||(31874047-31874112)
chr8 (613-684)||(9269977-9270049)
chr8 (620-683)||(13864322-13864386)
chr8 (606-681)||(16937428-16937504)
chr8 (613-684)||(23766698-23766770)
chr8 (642-684)||(10042747-10042789)
chr8 (625-681)||(44295284-44295341)
chr8 (606-684)||(15665488-15665567)
chr8 (623-684)||(9992631-9992693)
chr8 (642-680)||(27534489-27534527)
chr8 (642-684)||(37658952-37658994)
chr8 (620-684)||(36545867-36545932)
[»] chr6 (7 HSPs)
chr6 (612-684)||(32457601-32457674)
chr6 (606-684)||(16913277-16913356)
chr6 (645-684)||(19759777-19759816)
chr6 (620-682)||(33194568-33194631)
chr6 (642-684)||(12576564-12576606)
chr6 (643-684)||(32804281-32804322)
chr6 (621-681)||(34020582-34020643)
[»] scaffold0045 (1 HSPs)
scaffold0045 (620-682)||(9736-9799)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4623477 - 4623257
Alignment:
Q  9 cttttttcagtgtctaacaaactaaaatttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggc 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623477 cttttttcagtgtctaataaactaaaatttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggc 4623378  T
Q  109 actcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623377 actcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaat 4623278  T
Q  209 tatattatttctgcactctaa 229  Q
    ||||||||||  |||||||||    
T  4623277 tatattattttcgcactctaa 4623257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 277 - 533
Target Start/End: Complemental strand, 4623201 - 4622952
Alignment:
Q  277 gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623201 gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact 4623102  T
Q  377 ttgttgattatgagaatg---atcttaaaagacaccctaagctctctgcccgttggtttaggaagtttcttcaacataacagaattattggttgatgcat 473  Q
    ||||||||||||||||||   |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||      
T  4623101 ttgttgattatgagaatggtcatcttacaagacaccctaagctctctgcccggtggtttaggaagtttcttcaacataatagaattattggttgatgc-- 4623004  T
Q  474 gtcatcatatgtcatcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 533  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623003 --------atgtcatcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 4622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 289 - 444
Target Start/End: Complemental strand, 4598673 - 4598518
Alignment:
Q  289 ggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgattatg 388  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  4598673 ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacaccgtgcgttttggaattaactttgttgattatg 4598574  T
Q  389 agaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4598573 agaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaaatttctt 4598518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 4598947 - 4598799
Alignment:
Q  36 tttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgatta 135  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||    
T  4598947 tttgaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcgctcatggatactaacagaattgacta 4598848  T
Q  136 cttttatcgtcatctatattatcttttatctgcaatgaggtagcaccct 184  Q
    || ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  4598847 ctattatcgtcatctatattatgtttcttctgcaatcaggtagcaccct 4598799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 25015913 - 25015751
Alignment:
Q  282 aaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgtt 381  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||   |  |||||||||   ||||||||||| |||| ||||    
T  25015913 aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttgaatggctggctggatacactagacgttttggaatgaactatgtt 25015814  T
Q  382 gattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 444  Q
     ||||  |  || |||||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  25015813 aattacaatgataatcttaaaagacaccaaaagctctctgcccattggtttaggaactttctt 25015751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 606 - 683
Target Start/End: Complemental strand, 4622875 - 4622798
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4622875 cgtcaccaaaactctagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacc 4622798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 25037193 - 25037031
Alignment:
Q  282 aaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgtt 381  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||   | ||||||||     ||||||||||||||||||||     
T  25037193 aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttgaatggctggccggatacagaagacgttttggaattaactttgta 25037094  T
Q  382 gattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 444  Q
    |||||  |  || |||||||||||||||  ||||| ||||||| |||||||||||| ||||||    
T  25037093 gattacaaagataatcttaaaagacaccaaaagctttctgcccattggtttaggaattttctt 25037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 25037406 - 25037315
Alignment:
Q  80 aatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat 171  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||| ||||| |||||| ||| |||||||||    
T  25037406 aatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttcatctgcaat 25037315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 25016125 - 25016032
Alignment:
Q  78 tcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat 171  Q
    ||||||||||||| |||||||| ||||| || || ||||||||| |||||||||||||||||||||| ||||| |||||| ||| |||||||||    
T  25016125 tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttcatctgcaat 25016032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 4634232 - 4634311
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  4634232 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcaccc 4634311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 9661802 - 9661881
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  9661802 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 9661881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 1657721 - 1657656
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  1657721 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 1657656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 16991835 - 16991900
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  16991835 tagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcaccc 16991900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 684
Target Start/End: Original strand, 11817028 - 11817100
Alignment:
Q  613 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||| |||||||||||||||| || ||||||||||| |||| ||| || |||||| ||||||||||||    
T  11817028 aaaactttaatttcttcttcttcatccatcaaagaggggtggtttagggttaagttttgacccaaaatcaccc 11817100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 25002270 - 25002314
Alignment:
Q  116 gatactaacagaattgattacttttatcgtcatctatattatctt 160  Q
    |||||| |||||||||||||||||||||||||||| |||||||||    
T  25002270 gatactgacagaattgattacttttatcgtcatctttattatctt 25002314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 683
Target Start/End: Complemental strand, 44021691 - 44021652
Alignment:
Q  644 agaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  44021691 agaggggtggtttaaggtcaatttttgatccaaaatcacc 44021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 685
Target Start/End: Complemental strand, 46729047 - 46729004
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 685  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  46729047 aaagaggggtgatttagggtcaatttttgacccaaaatcaccct 46729004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 25044977 - 25044895
Alignment:
Q  78 tcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatctt 160  Q
    ||||||||||||| || || || |||||  | || || ||||||  ||||||||||||||||||||||||||| |||||||||    
T  25044977 tcaatgatccaacactgtcgcttgaagaatcccttatagatactctcagaattgattacttttatcgtcatctttattatctt 25044895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 41486561 - 41486603
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  41486561 aaagaggggttatttagggtcaatttttgatccaaaatcaccc 41486603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 681
Target Start/End: Complemental strand, 14542658 - 14542601
Alignment:
Q  625 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 14542601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 28588524 - 28588589
Alignment:
Q  620 tagtttcttcttcttcatcaataa-agaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || | ||| |||||||||| ||||||||||||| ||||||||||||    
T  28588524 tagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcaccc 28588589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 682
Target Start/End: Complemental strand, 54420863 - 54420800
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||    
T  54420863 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcac 54420800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 3673609 - 3673651
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  3673609 aaagaggggtgatttagggtcaatttttgaccccaaatcaccc 3673651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 757 - 795
Target Start/End: Complemental strand, 4622724 - 4622686
Alignment:
Q  757 gtgatttcgtcgtcctagtgcgacgtgggtgtgtttgtc 795  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  4622724 gtgatttcgtcgtcttagtgcgacgtgggagtgtttgtc 4622686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 681
Target Start/End: Complemental strand, 4959697 - 4959664
Alignment:
Q  648 gggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||||||| |||||||||||||||||||||||    
T  4959697 gggtgatttagggtcaatttttgatccaaaatca 4959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 277 - 444
Target Start/End: Original strand, 18805793 - 18805960
Alignment:
Q  277 gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||  | ||||||||||||||||    
T  18805793 gtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatggcaagacggatacaccttacgttttggaattaact 18805892  T
Q  377 ttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 444  Q
    |||||||||   | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18805893 ttgttgatttcaaaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttctt 18805960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 18805534 - 18805725
Alignment:
Q  17 agtgtctaacaaactaaaatttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatgg 116  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||||| | |||||   | |||||||||| |||||||| |||||| | |||||||    
T  18805534 agtgtcttataaactaaaatttgaaaactctaataaatttaaatcataggtttaaatgagtacgatgatccaaccctatcactcgaagagacgctcatgg 18805633  T
Q  117 atactaacagaattgattacttttatcgtcatctatattatcttttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaat 208  Q
    ||| | | ||||||||||||  |||||||||||| |||||  ||  ||||||||| |||||||||||||| ||||||||||| |||||||||    
T  18805634 atatttatagaattgattaccattatcgtcatctttattacgttgcatctgcaatcaggtagcaccctctctttacttaaataagaatcaat 18805725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 3390381 - 3390460
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  3390381 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 3390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 25771394 - 25771473
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  25771394 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 25771473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 6089859 - 6089921
Alignment:
Q  623 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcaccc 6089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 27024304 - 27024225
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||| ||||||||||| ||||||| || ||||| |||||||||| ||||| ||||||| ||||||||||||    
T  27024304 cgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcaccc 27024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 40125338 - 40125417
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| |||||| |||||||||||| ||||||| |  |||||||||||||||| ||| ||||||||| ||||||||||||    
T  40125338 cgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcaccc 40125417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 614 - 683
Target Start/End: Original strand, 3464916 - 3464986
Alignment:
Q  614 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    ||||| || |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||||||||||    
T  3464916 aaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcacc 3464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 613 - 683
Target Start/End: Complemental strand, 25237484 - 25237413
Alignment:
Q  613 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    |||||| |||||| |||| ||||||| || ||||||||||||||||  ||||| ||||||||||||||||||    
T  25237484 aaaactctagtttattctccttcatctattaaagaggggtgatttagagtcaacttttgatccaaaatcacc 25237413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Complemental strand, 31263111 - 31263053
Alignment:
Q  614 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 671  Q
    |||||||||||| |||||||||||| || |||||||||||||||| ||||||| |||||    
T  31263111 aaactttagttttttcttcttcatccatcaaagaggggtgatttagggtcaatctttga 31263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 37883639 - 37883681
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  37883639 aaagaggggtgatttagggtcaatttttaatccaaaatcaccc 37883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 10589001 - 10589066
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||| |||||||| |  ||| |||||||||||| ||||||||||||| ||||||||||||    
T  10589001 tagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcaccc 10589066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 682
Target Start/End: Complemental strand, 15674103 - 15674062
Alignment:
Q  641 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  15674103 taaagaggggtgatttagggtcaatttttgacccaaaatcac 15674062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 25516457 - 25516522
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||| ||||| ||||||||||||    
T  25516457 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcaccc 25516522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 41176825 - 41176890
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| |||||| |||||    
T  41176825 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccaccc 41176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 44167860 - 44167795
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  ||||||||||||| || ||||||||||||| ||||||||||||    
T  44167860 tagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcaccc 44167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 684
Target Start/End: Complemental strand, 7640481 - 7640442
Alignment:
Q  645 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcaccc 7640442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 684
Target Start/End: Complemental strand, 16880088 - 16880045
Alignment:
Q  641 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||    
T  16880088 taaagaggggtgatttttggtcaatttttgacccaaaatcaccc 16880045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 26491289 - 26491331
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||    
T  26491289 aaagaggggtaatttaagttcaatttttgacccaaaatcaccc 26491331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 685
Target Start/End: Original strand, 43566840 - 43566905
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 685  Q
    ||||||||||| ||||||| |  |||||||||||||| | ||||||||||||| |||||||||||||    
T  43566840 tagtttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatcaccct 43566905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 3602948 - 3603013
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || ||||| |||||||||| |||||| ||||||  |||||||||||    
T  3602948 tagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcaccc 3603013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 681
Target Start/End: Complemental strand, 9715667 - 9715634
Alignment:
Q  648 gggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||||||| |||||||||||||||||||||||    
T  9715667 gggtgatttagggtcaatttttgatccaaaatca 9715634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 682
Target Start/End: Complemental strand, 17037778 - 17037737
Alignment:
Q  641 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  17037778 taaagaggggtgatttttggtcaatttttgacccaaaatcac 17037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 25623196 - 25623131
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||| ||||||||  || ||||||||||||||||   ||||||||||| ||||||||||||    
T  25623196 tagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaatcaccc 25623131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 27191486 - 27191421
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || |||||||||    
T  27191486 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcaccc 27191421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 27841300 - 27841235
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || |||||||||    
T  27841300 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcaccc 27841235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 683
Target Start/End: Complemental strand, 42105880 - 42105839
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    ||||||||||| |||| ||||||||||||| |||||||||||    
T  42105880 aaagaggggtgctttagggtcaatttttgacccaaaatcacc 42105839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 31645778 - 31645857
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  31645778 cgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcaccc 31645857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 6887343 - 6887264
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||| ||||||||||| ||||||| || |||||||||||||||| ||||||||||| | ||||||||||||    
T  6887343 cgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcaccc 6887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 34894067 - 34894002
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  34894067 tagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcaccc 34894002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 33486735 - 33486656
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| |||||| ||| |||||||  ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||    
T  33486735 cgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 33486656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 28618567 - 28618632
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||| | ||||||||||||    
T  28618567 tagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcaccc 28618632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 643 - 684
Target Start/End: Complemental strand, 29310476 - 29310435
Alignment:
Q  643 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcaccc 29310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 41554472 - 41554514
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  41554472 aaagaggggtgatttaggatcaatttttgatccaaaatcaccc 41554514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 680
Target Start/End: Original strand, 41988139 - 41988208
Alignment:
Q  612 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatc 680  Q
    ||||||| ||||||||||| ||||| | || |||||||||||||||| | |||||||||||| |||||||    
T  41988139 caaaactctagtttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatc 41988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 30363051 - 30363135
Alignment:
Q  302 aaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgatta 386  Q
    ||||||||||||| ||||| || |||||||| |||||||||  ||| || ||||| ||| | |||||||| |||||||| |||||    
T  30363051 aaggatattttgcgtggtcgctattggacaattttgaatggggtgaagggtacacagtgaggtttggaatgaactttgtagatta 30363135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 684
Target Start/End: Complemental strand, 19646169 - 19646127
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||    
T  19646169 aaagaggggtggtttaaggtcaatgtttgacccaaaatcaccc 19646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 686
Target Start/End: Original strand, 2415393 - 2415430
Alignment:
Q  649 ggtgatttaaggtcaatttttgatccaaaatcaccctt 686  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcaccctt 2415430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 684
Target Start/End: Original strand, 41357993 - 41358066
Alignment:
Q  612 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||| ||||||||| | ||||||  || |||||  ||||||||| ||||||||||||| ||||||||||||    
T  41357993 caaaactctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaatcaccc 41358066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 606 - 681
Target Start/End: Complemental strand, 27469897 - 27469821
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 681  Q
    ||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||||    
T  27469897 cgtcaccaaaattctagtttcttcttcttcatccattaaagaggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 22345077 - 22344998
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||||||||||| ||||||||||||    
T  22345077 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcaccc 22344998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 612 - 686
Target Start/End: Original strand, 52839378 - 52839453
Alignment:
Q  612 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 686  Q
    ||||||| |||||| ||||  |||||| || |||||||||||||||| ||||||||||||| ||||||||||||||    
T  52839378 caaaactctagtttgttctctttcatccattaaagaggggtgatttagggtcaatttttgacccaaaatcaccctt 52839453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 682
Target Start/End: Complemental strand, 6213037 - 6212974
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||| |||| || || |||||||||||||||| ||||||||||||| ||||||||||    
T  6213037 tagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcac 6212974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 671
Target Start/End: Complemental strand, 14717407 - 14717341
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 671  Q
    ||||| ||||||| ||||||||||| ||||||| |  |||||||||||||||| |||||||||||||    
T  14717407 cgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttga 14717341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 683
Target Start/End: Complemental strand, 44514119 - 44514077
Alignment:
Q  641 taaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  44514119 taaagaggggtgatttagggtcaatttttgacccaaaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 30853934 - 30853869
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  ||||||| |||||| ||||||||||||||| ||||||||||||    
T  30853934 tagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcaccc 30853869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 684
Target Start/End: Original strand, 38646539 - 38646612
Alignment:
Q  612 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||| || ||| |||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||||||||    
T  38646539 caaaactctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcaccc 38646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 684
Target Start/End: Complemental strand, 13691916 - 13691844
Alignment:
Q  614 aaactttagtttcttcttcttcatcaa-taaagagggg-tgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||| ||| |||||||||||||||| | |||||||||| || |||| ||||||||||||| ||||||||||||    
T  13691916 aaaccttaatttcttcttcttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcaccc 13691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 642 - 686
Target Start/End: Original strand, 52839507 - 52839551
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 686  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  52839507 aaagaggggtgatttatgatcaatttttgacccaaaatcaccctt 52839551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 684
Target Start/End: Original strand, 5832220 - 5832261
Alignment:
Q  643 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||||| ||||||||||||| || |||||||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcaccc 5832261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 33703660 - 33703595
Alignment:
Q  620 tagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||| |||| ||||||| | ||||||||| ||||||| ||||||||||| | ||||||||||||    
T  33703660 tagttttttctccttcatccactaaagagggatgatttatggtcaattttttacccaaaatcaccc 33703595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 40775216 - 40775295
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  || |||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  40775216 cgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcaccc 40775295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 641 - 684
Target Start/End: Original strand, 28015341 - 28015384
Alignment:
Q  641 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  28015341 taaagaggggtgatttagggtcaatttttgatccaaaatcaccc 28015384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 682
Target Start/End: Complemental strand, 41748657 - 41748589
Alignment:
Q  615 aactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    |||| |||||||||| ||||||| || |||||||  |||||||| ||||||||||||||||||||||||    
T  41748657 aactctagtttcttcatcttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcac 41748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 684
Target Start/End: Complemental strand, 24045360 - 24045318
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  24045360 aaagagtggtgatttaaggtcaatttttgacccaaaatcaccc 24045318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 47749720 - 47749762
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  47749720 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 47749762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 683
Target Start/End: Original strand, 16263373 - 16263414
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  16263373 aaagaggggtgatttaggatcaatttttgatccaaaatcacc 16263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 24470358 - 24470423
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| ||||||||||||    
T  24470358 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcaccc 24470423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 24475306 - 24475371
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| ||||||||||||    
T  24475306 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcaccc 24475371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 681
Target Start/End: Original strand, 47156388 - 47156421
Alignment:
Q  648 gggtgatttaaggtcaatttttgatccaaaatca 681  Q
    ||||||||||||||||||||||||||||||||||    
T  47156388 gggtgatttaaggtcaatttttgatccaaaatca 47156421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 642 - 682
Target Start/End: Complemental strand, 23732521 - 23732481
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  23732521 aaagaggggtgatttaaggtcaatttttgactcaaaatcac 23732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 684
Target Start/End: Complemental strand, 30992948 - 30992909
Alignment:
Q  645 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  30992948 gaggggtgatttaaggttaatttttgacccaaaatcaccc 30992909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 684
Target Start/End: Complemental strand, 38649506 - 38649444
Alignment:
Q  623 tttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||  ||||||||| |||| ||||||||||||  |||||||||||| ||||||||||||    
T  38649506 tttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcaccc 38649444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 669
Target Start/End: Complemental strand, 23177740 - 23177683
Alignment:
Q  613 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaattttt 669  Q
    |||||| ||||||||||| ||||||| || ||||| | ||||||||||||||||||||    
T  23177740 aaaactctagtttcttctccttcatccattaaagatgagtgatttaaggtcaattttt 23177683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 681
Target Start/End: Complemental strand, 25855342 - 25855309
Alignment:
Q  648 gggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||||||| |||||||||||||||||||||||    
T  25855342 gggtgatttagggtcaatttttgatccaaaatca 25855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 681
Target Start/End: Original strand, 43483558 - 43483619
Alignment:
Q  620 tagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||||| | |||||||| |  |||||| |||||||| ||||||||||||||| |||||||    
T  43483558 tagtttctgcatcttcatccactaagaggagtgatttagggtcaatttttgatctaaaatca 43483619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 49166890 - 49166955
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| | ||||||||||    
T  49166890 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcaccc 49166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 1165561 - 1165482
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  1165561 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 1165482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 20201209 - 20201144
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||    
T  20201209 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 20201144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 20203391 - 20203326
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||    
T  20203391 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 20203326  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 22844000 - 22844079
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  |||||| |||| ||||||  || |||||||| ||||||||||||||||||||| ||||||||||||    
T  22844000 cgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcaccc 22844079  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 42106060 - 42106139
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  |||||||||| |||||||| |  |||||||||||||||| ||||||||||||| | ||||||||||    
T  42106060 cgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcaccc 42106139  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 43029632 - 43029711
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||| ||||||| ||||||||||||    
T  43029632 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcaccc 43029711  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 50460160 - 50460222
Alignment:
Q  623 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||   ||||||||||    
T  50460160 tttcttcttcttcatccatcaaagagggatgatttaaggtcaatttttgacataaaatcaccc 50460222  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 684
Target Start/End: Complemental strand, 1220374 - 1220301
Alignment:
Q  612 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||| || |||||||| ||||| | || |||||||||||||||| | |||||||||||| |||||||||||    
T  1220374 caaaactctaatttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcaccc 1220301  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 41882559 - 41882494
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||| ||||    
T  41882559 tagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattaccc 41882494  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 50519753 - 50519818
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||||    
T  50519753 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcaccc 50519818  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 913483 - 913404
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| |||||| ||||||||||| |||||||| |  |||||||||| ||| |  |||||||||||| ||||||||||||    
T  913483 cgtcaccaaaaccttagtttcttcatcttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcaccc 913404  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 684
Target Start/End: Complemental strand, 1806605 - 1806546
Alignment:
Q  626 cttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||| |  ||||||||||| |||| |||||||||||||||| |||||||||    
T  1806605 cttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcaccc 1806546  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 685
Target Start/End: Complemental strand, 43839667 - 43839602
Alignment:
Q  620 tagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 685  Q
    ||||||||||| |||||| || |||||| |||||||||| ||||||||||||| ||||| |||||||    
T  43839667 tagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttga-ccaaagtcaccct 43839602  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 22286900 - 22286835
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| | ||||| ||||    
T  22286900 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattaccc 22286835  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 31874047 - 31874112
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  31874047 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 31874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 684
Target Start/End: Original strand, 9269977 - 9270049
Alignment:
Q  613 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||| ||||||||||| ||||||| |  |||||||||||||||| | ||||||||||| ||||||||||||    
T  9269977 aaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcaccc 9270049  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 683
Target Start/End: Original strand, 13864322 - 13864386
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 683  Q
    ||||||||||| ||||||  || ||||||||||||||||||||||| |||||| |||||||||||    
T  13864322 tagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacc 13864386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 681
Target Start/End: Complemental strand, 16937504 - 16937428
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 681  Q
    ||||| ||||||  ||||||||||  ||||||| |  |||||||||||||||| |||||||||||||||||||||||    
T  16937504 cgtcatcaaaaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatca 16937428  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 684
Target Start/End: Original strand, 23766698 - 23766770
Alignment:
Q  613 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||| ||||||||||| ||||||| |  ||||||  |||||||||||||||||||||| ||||||||||||    
T  23766698 aaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc 23766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 10042747 - 10042789
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  10042747 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 10042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 681
Target Start/End: Original strand, 44295284 - 44295341
Alignment:
Q  625 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 44295341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 15665488 - 15665567
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatc-aataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||| |||||||||   ||||||| || |||||||||||||||| |||||| ||||||  |||||||||||    
T  15665488 cgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcaccc 15665567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 9992631 - 9992693
Alignment:
Q  623 tttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||| |||||| || || || ||||||||||| ||||||||||||| ||||||||||||    
T  9992631 tttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcaccc 9992693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 680
Target Start/End: Complemental strand, 27534527 - 27534489
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatc 680  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  27534527 aaagaggggtgatttagggtcaatttttgatcccaaatc 27534489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 37658952 - 37658994
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| |||||||||||||  |||||||||||    
T  37658952 aaagaggggtgatttagggtcaatttttgacacaaaatcaccc 37658994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 36545932 - 36545867
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||| ||||||| |  |||||||| ||||||||||||||||| ||| |||| |||||||    
T  36545932 tagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcaccc 36545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 612 - 684
Target Start/End: Original strand, 32457601 - 32457674
Alignment:
Q  612 caaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||| ||||||| |||| ||||||| | |||||||||||||||||  |||||||||||| ||||||||||||    
T  32457601 caaaaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcaccc 32457674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 16913277 - 16913356
Alignment:
Q  606 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||| ||||||  ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| || |||||||||    
T  16913277 cgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcaccc 16913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 684
Target Start/End: Original strand, 19759777 - 19759816
Alignment:
Q  645 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcaccc 19759816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 682
Target Start/End: Original strand, 33194568 - 33194631
Alignment:
Q  620 tagtttcttcttcttcatcaata-aagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||||||||||| ||  || |  ||||||||| ||||||||||||||||||||||||    
T  33194568 tagtttcttcttcttcatccattcaatattggtgatttagggtcaatttttgatccaaaatcac 33194631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 684
Target Start/End: Complemental strand, 12576606 - 12576564
Alignment:
Q  642 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  12576606 aaagaggggtgatttagggtcaatttttgaccctaaatcaccc 12576564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 684
Target Start/End: Original strand, 32804281 - 32804322
Alignment:
Q  643 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 684  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  32804281 aagatgggtgatttagggtcaatttttgacccaaaatcaccc 32804322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 681
Target Start/End: Original strand, 34020582 - 34020643
Alignment:
Q  621 agtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 681  Q
    |||||||||||||||||| |  ||||||||||| |||| ||||||||||||| |||| ||||    
T  34020582 agtttcttcttcttcatctaccaaagaggggtggtttagggtcaatttttgacccaacatca 34020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 682
Target Start/End: Complemental strand, 9799 - 9736
Alignment:
Q  620 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 682  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| ||||||||||    
T  9799 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcac 9736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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