View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037R-Insertion-9 (Length: 842)
Name: NF3037R-Insertion-9
Description: NF3037R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037R-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 332 - 717
Target Start/End: Original strand, 9233917 - 9234302
Alignment:
| Q |
332 |
tccagctgctgtagaaacacaagatccagttgaagttgagaccaaggaagtagtaacagaagaagccaaggaagagaatacagaagcacctaaagaaaca |
431 |
Q |
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| T |
9233917 |
tccagctgccgtagaaacacaagatccagttgaagttgagaccaaggaagtggtaacagaagaagccaaggaagagaatacagaagcacctaaagaaaca |
9234016 |
T |
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| Q |
432 |
gaggaatcagttgaagaagtgaaggaagaggctgcagcagtagtggaggagcctgtagcaaccattgaaaatgagtcagaagcaccagcagcagtaactg |
531 |
Q |
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| T |
9234017 |
gaggaatcagttgaagaagtgaaggaagaggctgcagcagtagtggaggagcctgtagcaaccattgaaaatgagtcagaagcaccagcagcagtaactg |
9234116 |
T |
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| Q |
532 |
ctgaggaagagaatgttaaaccagttgagtcagtggaagctccagcagcagaagaagttccagttgagaaatctgaagcttaaaacaatggagggtgtgt |
631 |
Q |
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| T |
9234117 |
ctgaggaagagaatgttaaaccagttgagtcagtggaagctccagcagcagaagaagttccagttgagaaatctgaagcttaaaacaatggagggtgtgt |
9234216 |
T |
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| Q |
632 |
gaatggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtctaccattttgcatgtcgaagttgaaaa |
717 |
Q |
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| T |
9234217 |
gaatggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtctaccattttgcatgtcgaggttgaaaa |
9234302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 9233706 - 9233860
Alignment:
| Q |
121 |
ataaatgaagatggtaatttcaggttgcacaagtaccaccaccaacaacagtgcccgaaacaacaccggaggtgatcaagacagaggaaacaattccaga |
220 |
Q |
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| T |
9233706 |
ataaatgaagatggtaatttcaggttgcacaagtaccaccaccaacaacagtgcccgaaacaacaccggaggtgatcaagacagaggaaacaattccaga |
9233805 |
T |
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| Q |
221 |
acgaccagcgatcgaagttcctgctccagaacaaccggaagctgaagttcctgcc |
275 |
Q |
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| T |
9233806 |
acaaacagcgatcgaagttcctgctccagaacaaccggaagctgaagttcctgcc |
9233860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 778 - 840
Target Start/End: Original strand, 9234363 - 9234425
Alignment:
| Q |
778 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatgg |
840 |
Q |
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| T |
9234363 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatgg |
9234425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 9233597 - 9233633
Alignment:
| Q |
9 |
aagttctattaatgtaatatgattaacctaatgtatt |
45 |
Q |
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| T |
9233597 |
aagttctattaatgtaatatgattaacctaatgtatt |
9233633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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