View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_high_13 (Length: 350)
Name: NF3037_high_13
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 21612642 - 21612293
Alignment:
| Q |
1 |
tgataaaagagagaatttggtgagcataaatttgtgacattacttgttacaaaccatgataccctgagggaatctttaaccatgttgcagtcgaaaaaat |
100 |
Q |
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| T |
21612642 |
tgataaaagagagaatttggtgagcataaatttgtgacattacttgttacaaaccatgataccctgagggaatctttaaccatgttgcagtcgaaaaaat |
21612543 |
T |
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| Q |
101 |
caaattgacaagatgactcctccagtttgcaaacactcttccagcatgcttcttgtctttcaattgatagaagataccaacaagcccctaaaaccttcaa |
200 |
Q |
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| T |
21612542 |
caaattgacaagatgactcctccagtttgcaaacactcttccagcatgcttcttgtctttcaattgatagaagataccaacaagcccctaaaaccttcaa |
21612443 |
T |
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| Q |
201 |
cagagaaatatgagttcagtatataatgtattagtaatgcattggtaagatacacaattgcagccgcatttgtctgcatttcataacgtaacattgcagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21612442 |
cagagaaatatgagttcagtatataatgtattagtaatgcattggtaagatacacaattgcagccgcatttgtctgcatttcataacgtaacattgcagc |
21612343 |
T |
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| Q |
301 |
tataatttaaaagaaaaactgaaaagactctaatatgtgatgatgtccat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21612342 |
tataatttaaaagaaaaactgaaaagactctaatatgtgacaatgtccat |
21612293 |
T |
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