View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_high_15 (Length: 252)

Name: NF3037_high_15
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_high_15
NF3037_high_15
[»] chr5 (3 HSPs)
chr5 (127-245)||(13674914-13675034)
chr5 (18-104)||(13675029-13675115)
chr5 (39-107)||(17365491-17365559)
[»] chr2 (1 HSPs)
chr2 (91-181)||(41755235-41755327)
[»] chr4 (3 HSPs)
chr4 (92-146)||(588700-588754)
chr4 (77-206)||(18905646-18905778)
chr4 (92-161)||(27059421-27059490)
[»] chr8 (2 HSPs)
chr8 (91-200)||(21218060-21218171)
chr8 (46-160)||(27842607-27842719)
[»] chr7 (1 HSPs)
chr7 (92-144)||(5747895-5747947)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 13675034 - 13674914
Alignment:
Q  127 tataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagttagacgcaattcactacaacgggagaagatcaatatgtccaggtt 224  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13675034 tataaaatacgacaaagaaccttgaacatttatctagtagatttgaataccaagttagacgcaattcactacaacgggagaaaatcaatatgtccaggtt 13674935  T
Q  225 tcaagttgatatctcactgtc 245  Q
    |||||||||||||||||||||    
T  13674934 tcaagttgatatctcactgtc 13674914  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 13675115 - 13675029
Alignment:
Q  18 gttaactacctttacatggatatttttatgtggttcaggttgcaccgacagtttctacagtccacaatgcatgtaaacttctataaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  13675115 gttaactacctttacatggatatttttatgtggttcaggttgcagcgacaatttctacagtctacaatgcatgtaaacttctataaa 13675029  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 17365491 - 17365559
Alignment:
Q  39 atttttatgtggttcaggttgcaccgacagtttctacagtccacaatgcatgtaaacttctataaattg 107  Q
    |||||| |||||| || |||||||||||||||||||  ||||||||||||   ||| ||||||||||||    
T  17365491 atttttttgtggtccacgttgcaccgacagtttctatggtccacaatgcaccaaaaattctataaattg 17365559  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 41755235 - 41755327
Alignment:
Q  91 taaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagtta 181  Q
    ||||||||||||||||||   ||||| || ||||||||||||| ||||||||||||| |||||| ||||| |||| |||||  ||||||||||    
T  41755235 taaacttctataaattgacgtgtttgtttcatttgttataaaagacaacaaagaaccatgaacacttatcaagtaaatttgaataccaagtta 41755327  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 588754 - 588700
Alignment:
Q  92 aaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaac 146  Q
    ||||||||||||||||| | |||||||| |||| |||||||| ||||||||||||    
T  588754 aaacttctataaattgaaatgtttggttcatttattataaaacacaacaaagaac 588700  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 18905778 - 18905646
Alignment:
Q  77 gtccacaatgcatgtaaacttctataaattgatacgtttggttaattt-gttataaaatacaacaaagaaccttgaacatttatccagtagatttg--ta 173  Q
    |||||| || || ||||||||| |||||||||   |||||||| |||| ||  ||||| ||||| | ||||| ||||||||||||||||||||  |   |    
T  18905778 gtccacgattcacgtaaacttcaataaattgaagtgtttggttcattttgtgttaaaacacaactatgaaccatgaacatttatccagtagatcagaaca 18905679  T
Q  174 ccaagttagacgcaattcactacaacgggagaa 206  Q
    ||||||||| |||| || ||||||||| |||||    
T  18905678 ccaagttagccgcagtttactacaacgagagaa 18905646  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 27059421 - 27059490
Alignment:
Q  92 aaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatcc 161  Q
    |||||||||||||||| |  |||||||| ||||| | ||||| |||||||| |||| |||||| ||||||    
T  27059421 aaacttctataaattggtgtgtttggttcatttgctgtaaaacacaacaaaaaaccgtgaacacttatcc 27059490  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 21218171 - 21218060
Alignment:
Q  91 taaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaaccttgaacatttatccagtagattt--gtaccaagttagacgcaa 188  Q
    |||||||||||| |||| |  |||||||| ||| | ||||||| | || ||| || | |||||||||||||||||||| |   ||||||||||| |||||    
T  21218171 taaacttctatatattggtgtgtttggttcattcgctataaaaaaaaaaaaaaaaacatgaacatttatccagtagatctaaataccaagttagccgcaa 21218072  T
Q  189 ttcactacaacg 200  Q
    || |||||||||    
T  21218071 tttactacaacg 21218060  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 27842607 - 27842719
Alignment:
Q  46 tgtggttcaggttgcaccgacagtttctacagtccacaatgcatgtaaacttctataaattgatacgtttggttaatttgttataaaatacaacaaagaa 145  Q
    |||||||||||||||| |||||  || |   |||||| | |||  ||||||| |||||||||||  ||||| || ||||||| ||||| |||||||||||    
T  27842607 tgtggttcaggttgcaacgacaaattatgtggtccacgacgcacataaacttgtataaattgat--gtttgattcatttgttgtaaaacacaacaaagaa 27842704  T
Q  146 ccttgaacatttatc 160  Q
    || |||||| |||||    
T  27842705 ccatgaacacttatc 27842719  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 5747895 - 5747947
Alignment:
Q  92 aaacttctataaattgatacgtttggttaatttgttataaaatacaacaaaga 144  Q
    |||||||||||||||| |  |||||||| ||||||| ||||| ||||||||||    
T  5747895 aaacttctataaattggtgtgtttggttcatttgttgtaaaacacaacaaaga 5747947  T

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