View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_high_2 (Length: 542)
Name: NF3037_high_2
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_high_2 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 542
Target Start/End: Original strand, 33594024 - 33594553
Alignment:
| Q |
11 |
cacagacacaggagaaggttgaaaatggcaggtggggggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcatta |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594024 |
cacagacacaggagaaggttgaaaatggcaggtggagggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcatta |
33594123 |
T |
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| Q |
111 |
cttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnnncattataaagtatccaattag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33594124 |
cttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttttcattataaagtatccaattag |
33594223 |
T |
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| Q |
211 |
accatgttttttgctttctaaagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgatcatataactcgagaattaaactcaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33594224 |
accatgttttttgctttctaaagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcatataactcgagaattaaactc-ga |
33594322 |
T |
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| Q |
311 |
ctcagcaaggtgtttgtttctgtagaaaattctnnnnnnnnttttacctataaaaggtcaaaatcattaaagaaattaacataattgcacaagcttaatc |
410 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594323 |
ctcagcaaggtgtttgtttctgtagaaaattctaaaaaaa-ttgtacctataaaatgtcaaaatcattaaagaaattaacataattgcacaagcttaatc |
33594421 |
T |
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| Q |
411 |
atcaaatttaaaactattatagtagtacaaatctaaataggttttggacaaaggctaattgcattttaatcatgatgctatacattagttttacatgtta |
510 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
33594422 |
atccaatttaaaactattatagtagaacaaatctaaataggttttggacaaagtctaattgcattttaatcatgatgctatacattatttttacatttta |
33594521 |
T |
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| Q |
511 |
tcttcaaaatgtacttggagaagaaccaaagt |
542 |
Q |
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| T |
33594522 |
tcttcaaaatgtacttggagaagaaccaaagt |
33594553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 542
Target Start/End: Original strand, 33601155 - 33601684
Alignment:
| Q |
11 |
cacagacacaggagaaggttgaaaatggcaggtggggggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcatta |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601155 |
cacagacacaggagaaggttgaaaatggcaggtggagggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcatta |
33601254 |
T |
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| Q |
111 |
cttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnnncattataaagtatccaattag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33601255 |
cttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttttcattataaagtatccaattag |
33601354 |
T |
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| Q |
211 |
accatgttttttgctttctaaagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgatcatataactcgagaattaaactcaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33601355 |
accatgttttttgctttctaaagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcatataactcgagaattaaactc-ga |
33601453 |
T |
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| Q |
311 |
ctcagcaaggtgtttgtttctgtagaaaattctnnnnnnnnttttacctataaaaggtcaaaatcattaaagaaattaacataattgcacaagcttaatc |
410 |
Q |
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| T |
33601454 |
ctcagcaaggtgtttgtttctgtagaaaattctaaaaaaa-ttgtacctataaaatgtcaaaatcattaaagaaattaacataattgcacaagcttaatc |
33601552 |
T |
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| Q |
411 |
atcaaatttaaaactattatagtagtacaaatctaaataggttttggacaaaggctaattgcattttaatcatgatgctatacattagttttacatgtta |
510 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
33601553 |
atccaatttaaaactattatagtagaacaaatctaaataggttttggacaaagtctaattgcattttaatcatgatgctatacattatttttacatttta |
33601652 |
T |
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| Q |
511 |
tcttcaaaatgtacttggagaagaaccaaagt |
542 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33601653 |
tcttcaaaatgtacttggagaagaaccaaagt |
33601684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 33586861 - 33587381
Alignment:
| Q |
20 |
aggagaaggttgaaaatggcaggtggggggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcattacttgtatcg |
119 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||||||||| |
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| T |
33586861 |
aggacaaggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcggttatcattacttgtatcg |
33586960 |
T |
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| Q |
120 |
ttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnnncattataaagtatccaattagaccatgttt |
219 |
Q |
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| T |
33586961 |
ttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttttcattataaagtatccaattagaccatgttt |
33587060 |
T |
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| Q |
220 |
tttgctttctaaagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgatcatataactcgagaattaaactcagactcagcaag |
319 |
Q |
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| T |
33587061 |
tttgctttctaaagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcatataactcgagaattaaactc-gactcagcaag |
33587159 |
T |
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| Q |
320 |
gtgtttgtttctgtagaaaattctnnnnnnnnttttacctataaaaggtcaaaatcattaaagaaattaacataattgcacaagcttaatcatcaaattt |
419 |
Q |
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| T |
33587160 |
gtgtttgtttctgtagaaaattctaaaaaaa-ttgtacctataaaatgtcaaaatcattaaagaaattaacataattgcacaagcttaatcatccaattt |
33587258 |
T |
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| Q |
420 |
aaaactattatagtagtacaaatctaaataggttttggacaaaggctaattgcattttaatcatgatgctatacattagttttacatgttatcttcaaaa |
519 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
33587259 |
aaaactattatagtagaacaaatctaaataggttttggacaaagtctaattgcattttaatcatgatgctatacattaattttacattttatcttcaaaa |
33587358 |
T |
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| Q |
520 |
tgtacttggagaagaaccaaagt |
542 |
Q |
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| T |
33587359 |
tgtacttggagaagaaccaaagt |
33587381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 33561694 - 33561780
Alignment:
| Q |
86 |
aagataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtttt |
172 |
Q |
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| T |
33561694 |
aagataacactctcagttgtcatcacttgcattgttgcagcatctagtggactcatttttggatatgaccttggaatttcaggtttt |
33561780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 33607998 - 33608078
Alignment:
| Q |
90 |
taacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt |
170 |
Q |
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| T |
33607998 |
taacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt |
33608078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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