View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_high_6 (Length: 432)

Name: NF3037_high_6
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_high_6
NF3037_high_6
[»] chr3 (4 HSPs)
chr3 (1-416)||(55211379-55211791)
chr3 (315-416)||(36326538-36326640)
chr3 (323-410)||(14029381-14029469)
chr3 (384-416)||(30912103-30912135)
[»] chr7 (6 HSPs)
chr7 (312-410)||(6102956-6103056)
chr7 (315-416)||(42513062-42513164)
chr7 (332-416)||(11206519-11206604)
chr7 (315-404)||(30452757-30452847)
chr7 (315-404)||(30456366-30456456)
chr7 (334-416)||(49017175-49017258)
[»] chr1 (3 HSPs)
chr1 (315-416)||(23405475-23405577)
chr1 (315-416)||(18583886-18583988)
chr1 (322-407)||(9893800-9893886)
[»] chr6 (6 HSPs)
chr6 (314-416)||(4834767-4834870)
chr6 (315-416)||(7415687-7415789)
chr6 (315-416)||(7422695-7422797)
chr6 (315-416)||(7426634-7426736)
chr6 (315-416)||(13886589-13886691)
chr6 (315-416)||(33242896-33242998)
[»] chr2 (2 HSPs)
chr2 (315-416)||(31211861-31211963)
chr2 (332-416)||(45327421-45327506)
[»] chr8 (2 HSPs)
chr8 (315-416)||(44762015-44762117)
chr8 (315-416)||(44765322-44765424)
[»] chr5 (4 HSPs)
chr5 (315-409)||(10321869-10321963)
chr5 (314-416)||(41709548-41709651)
chr5 (311-416)||(8123576-8123682)
chr5 (384-416)||(671510-671542)
[»] chr4 (3 HSPs)
chr4 (315-404)||(36050723-36050813)
chr4 (315-404)||(36053982-36054072)
chr4 (315-404)||(27387680-27387770)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 55211379 - 55211791
Alignment:
Q  1 ggtggaaaatataatcttttctccagatggataaatttatacaaaacgattttcatcttctccatttgaatgacgaaattctgacgagatgttttttaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211379 ggtggaaaatataatcttttctccagatggataaatttatacaaaacgatattcatcttctccatttgaatgacgaaattctgacgagatgttttttaag 55211478  T
Q  101 caagtaatgctacaacaacccgatatccaaagattctatttatttccatgccaacaactttggactgccacattaccttaccacacatttcaccgaagct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||    
T  55211479 caagtaatgctacaacaacccgatatccaaagattctatttatttccatgccaac---tgtggactgccacattaccttaccacacatttcaccgaagct 55211575  T
Q  201 acaattcattgcttcaacaaaatcatggcaatatgttttattgttaggcgagaagtgttctcccactgccaaactaaacagtagcagaagatgcacaaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  55211576 acaattcattgcttcaacaaaatcatggcaatatgttttattgttaggcgagaagtgttctcccactgccaaaccaaacagtagcagaagatgcacaaca 55211675  T
Q  301 agtgttgctgatattgatactacccaatttaagtagggatcacattccataaattagagaaaaactagagataagagagaaataaattcattatattttt 400  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211676 agtgttgctgatattgatactatccaatttaagtaggaagcacattccataaattagagaaaaactagagataagagagaaataaattcattatattttt 55211775  T
Q  401 cattgattctcataat 416  Q
    ||||||||||||||||    
T  55211776 cattgattctcataat 55211791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 36326640 - 36326538
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 36326542  T
Q  413 taat 416  Q
    ||||    
T  36326541 taat 36326538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 410
Target Start/End: Complemental strand, 14029469 - 14029381
Alignment:
Q  323 cccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattct 410  Q
    |||||||  ||||||||||||| |||| || ||||||  | ||||||||||||| ||| ||  |||||||||||||||||||||||||||    
T  14029469 cccaattcgagtagggatcacactccagaatttagagtgagaaactagagataaaaga-aaggaaattcattatatttttcattgattct 14029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 30912135 - 30912103
Alignment:
Q  384 aaattcattatatttttcattgattctcataat 416  Q
    |||||||||||||||||||||||||||||||||    
T  30912135 aaattcattatatttttcattgattctcataat 30912103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 410
Target Start/End: Complemental strand, 6103056 - 6102956
Alignment:
Q  312 tattgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattc 409  Q
    ||||||||| ||||||||  |||||| |||||| ||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  6103056 tattgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattgattc 6102957  T
Q  410 t 410  Q
    |    
T  6102956 t 6102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 42513062 - 42513164
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||||||||||| |||| |||||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 42513160  T
Q  413 taat 416  Q
    ||||    
T  42513161 taat 42513164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 416
Target Start/End: Complemental strand, 11206604 - 11206519
Alignment:
Q  332 agtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctcataat 416  Q
    ||||| ||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||||||    
T  11206604 agtagagatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctcataat 11206519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 30452847 - 30452757
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcatt 404  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcatt 30452757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 30456456 - 30456366
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcatt 404  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcatt 30456366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 49017258 - 49017175
Alignment:
Q  334 tagggatcacattccataaatta--gagaaaaactagagataagagagaaataaattcattatatttttcattgattctcataat 416  Q
    ||||||||||| |||||||||||  |||| ||||||||||||| ||| ||  ||||  ||||||||||||||| | |||||||||    
T  49017258 tagggatcacactccataaattagagagagaaactagagataaaaga-aagaaaatatattatatttttcattaagtctcataat 49017175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 23405475 - 23405577
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| |||||||| |||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 23405573  T
Q  413 taat 416  Q
    ||||    
T  23405574 taat 23405577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 18583886 - 18583988
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||| ||| ||| |||| |||||| |||| |||||||||||||| ||| ||  ||||||| |||||||||||||||||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaaga-aaggaaattcagtatatttttcattgattctca 18583984  T
Q  413 taat 416  Q
    ||||    
T  18583985 taat 18583988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 9893886 - 9893800
Alignment:
Q  322 acccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgat 407  Q
    ||||||||| |||||| |||||| | ||||| |||| ||||  |||||||||| | ||| | | ||||||||||||||||||||||||    
T  9893886 acccaatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaaga-aaattcattatatttttcattgat 9893800  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 416
Target Start/End: Complemental strand, 4834870 - 4834767
Alignment:
Q  314 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 411  Q
    ||||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||     
T  4834870 ttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattcta 4834772  T
Q  412 ataat 416  Q
    |||||    
T  4834771 ataat 4834767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 7415789 - 7415687
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| | |||| || ||||||||||||| |||| |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7415691  T
Q  413 taat 416  Q
    ||||    
T  7415690 taat 7415687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 7422797 - 7422695
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||||||||||| || | |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7422699  T
Q  413 taat 416  Q
    ||||    
T  7422698 taat 7422695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 7426736 - 7426634
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattaga--gaaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||||  || ||| |||||| |||||| | | |||||||||||||||||||||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaaga-aaattcattatatttttcattgattctca 7426638  T
Q  413 taat 416  Q
    ||||    
T  7426637 taat 7426634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | ||||||||||||||||||||||||||| |    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctaa 13886593  T
Q  413 taat 416  Q
    ||||    
T  13886592 taat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 33242998 - 33242896
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||| ||||||| |||| |||||||||| |  ||||||| |||| ||| ||| |||||||||||||||||||||||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaaga-aaagaaattcattatatttttcattgattctca 33242900  T
Q  413 taat 416  Q
    ||||    
T  33242899 taat 33242896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 31211963 - 31211861
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| | ||||||  ||||||||||||| |||| |||||| |||| |||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaga-aaattcattatatttttcattgattctca 31211865  T
Q  413 taat 416  Q
    ||||    
T  31211864 taat 31211861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 416
Target Start/End: Original strand, 45327421 - 45327506
Alignment:
Q  332 agtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctcataat 416  Q
    ||||||||||||| |||| |||||| |||| |||| ||||||||| ||| ||| ||||| |||||||||||||||  ||||||||||    
T  45327421 agtagggatcacactccagaaattaagagagaaaattagagataaaaga-aaagaaatttattatatttttcattttttctcataat 45327506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 44762117 - 44762015
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||| ||| |||||| ||| ||||||||||||||||||||||||| |||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaa-aaattcattatatttttcattgattttca 44762019  T
Q  413 taat 416  Q
    ||||    
T  44762018 taat 44762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 44765424 - 44765322
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 412  Q
    |||||| ||||||||  ||||||||| ||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||| |||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattttca 44765326  T
Q  413 taat 416  Q
    ||||    
T  44765325 taat 44765322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 409
Target Start/End: Original strand, 10321869 - 10321963
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaatt--agagaaaaactagagataagagagaaataaattcattatatttttcattgattc 409  Q
    |||||| ||||||||| ||||||||||||| ||||||| ||  ||||| || |||||||||||||| ||  ||||||||||| ||||||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagaga-aaggaaattcattat-tttttcattgattc 10321963  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 416
Target Start/End: Complemental strand, 41709651 - 41709548
Alignment:
Q  314 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 411  Q
    ||||||| ||||||||  ||||| ||||||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattctc 41709553  T
Q  412 ataat 416  Q
    |||||    
T  41709552 ataat 41709548  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 416
Target Start/End: Complemental strand, 8123682 - 8123576
Alignment:
Q  311 atattgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgatt 408  Q
    |||||||||| ||||||||  |||| |||||||| | || |||||||||  | ||| || ||| |||||| | | |||||||||||||||||||||||||    
T  8123682 atattgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaaga-aaattcattatatttttcattgatt 8123584  T
Q  409 ctcataat 416  Q
    ||||||||    
T  8123583 ctcataat 8123576  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 671542 - 671510
Alignment:
Q  384 aaattcattatatttttcattgattctcataat 416  Q
    ||||||||||||||||||||| |||||||||||    
T  671542 aaattcattatatttttcattaattctcataat 671510  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 36050813 - 36050723
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaatt-agaga-aaaactagagataagagagaaataaattcattatatttttcatt 404  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| | ||| |||||||||||||| ||| ||| |||||||||||||||||||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatt 36050723  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 36054072 - 36053982
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaatt-agaga-aaaactagagataagagagaaataaattcattatatttttcatt 404  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| | ||| |||||||||||||| ||| ||| |||||||||||||||||||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatt 36053982  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 27387770 - 27387680
Alignment:
Q  315 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcatt 404  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | ||||||||||| |  || ||| |||||||||||||||||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaagga-aaagaaattcattatatttttcatt 27387680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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