View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_high_7 (Length: 428)
Name: NF3037_high_7
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 34442164 - 34442563
Alignment:
| Q |
17 |
agcaacaagcacctcttgcgatgcatgatatgcactagaatgtgtggcttccagtcactcacactccaagattatgtctttgaaggaaagactcaactct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34442164 |
agcaacaagcacctcttgcgatgcatgatatgcactagaatgcgtggcttccagtcactcacactccaagattatgtctttgaaggaaagactcaactct |
34442263 |
T |
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| Q |
117 |
tcttccataggtgcatcctcggtcaatatctccaacattaattcggatgtgacctacaaaataaaaaatgattagaaaaattgtggcgtgacattgtcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
34442264 |
tcttccataggtgcatcctcggtcaatatctccaacattaattcggatgtgacctacaaaataaaaaatgattataaaaattgtgacgtgacattgtcac |
34442363 |
T |
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| Q |
217 |
tgccgttaagaggatttatccacctcataagtgcgagtcccccaaaatatacaacatgatcttcctgagtgatgtcactatgtcgtgttgtatgatgtgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34442364 |
tgccgttaagaggatttatccacctcataagtgcgagtcccccaaaatatacaacatgatcttcctgagtgatgtcactatgtcgtgttgtatgatgtgt |
34442463 |
T |
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| Q |
317 |
tttagaannnnnnnnnnnatgcattttagataagtcttaagtagttttagacagtttggagatgaaaatatcaagaaaatcaaggttcctgatccagaat |
416 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34442464 |
tttagaa----tttttttatgcattttcgataagtcttaagtagttttagacagtttggagatgaaaatatcaagaaaatcaaggttcctggtccagaac |
34442559 |
T |
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