View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_low_12 (Length: 369)
Name: NF3037_low_12
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 33800673 - 33800992
Alignment:
| Q |
1 |
aaacagataattccatatacagcttcaaatattgtatgattattaattcaatagaattttggtagcacaaaaa--gtatcatgagttcataataaatggg |
98 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
33800673 |
aaacagataattccaaatacagcttcaaagattgtatgattattaattcaatagaattttggtagcataaaaaaagtaccatgagttcataataaatggg |
33800772 |
T |
|
| Q |
99 |
acaaattcatcttgatggggattaattcctcaataatgaaataaattttnnnnnnn-ttatgctttctagctcagtgtcgaccagaaacttcttttaaat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33800773 |
acaaattcatcttgatggggattaattcctcaataatgaaataaatttaaaaaaaaattatgctttctagctcagtgtcgaccacaaacttcttttaaat |
33800872 |
T |
|
| Q |
198 |
tgcctttatcattttgattgtatgttaggtgtagaaagtaaatagagaaaaaataagtttctggtttgggcctcatacgatccttttgtttggtctaaac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33800873 |
tgcctttatcattttgattgtatgttaggtgtagaaagtaaatagagaaaaaagaagtttctggtttgggcctcatacgatccttttgtttggtctaaac |
33800972 |
T |
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| Q |
298 |
tggatcttgatccaagaaag |
317 |
Q |
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|||||||||||||||||||| |
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| T |
33800973 |
tggatcttgatccaagaaag |
33800992 |
T |
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