View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_low_13 (Length: 357)

Name: NF3037_low_13
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_low_13
NF3037_low_13
[»] chr6 (6 HSPs)
chr6 (1-343)||(31564316-31564668)
chr6 (84-248)||(33416366-33416536)
chr6 (205-334)||(33385707-33385837)
chr6 (260-319)||(33281320-33281376)
chr6 (277-331)||(33416538-33416592)
chr6 (260-319)||(33301947-33302003)
[»] chr5 (1 HSPs)
chr5 (85-239)||(30653203-30653360)
[»] chr2 (3 HSPs)
chr2 (202-331)||(17443374-17443503)
chr2 (1-47)||(17443537-17443583)
chr2 (1-53)||(43199930-43199982)
[»] scaffold0428 (2 HSPs)
scaffold0428 (260-319)||(12876-12932)
scaffold0428 (1-47)||(4001-4047)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 31564668 - 31564316
Alignment:
Q  1 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataatt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31564668 aaacagtctcacaagtgctaatatgagtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataatt 31564569  T
Q  101 cattttttctcttttacat------gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaa 194  Q
     ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564568 aattttttctcttttacatttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaa 31564469  T
Q  195 tagaaaca----gcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgt 290  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564468 tagaaacattaagcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgt 31564369  T
Q  291 ttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564368 ttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 31564316  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  84 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 181  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  182 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 248  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 334
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  205 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 303  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  304 aattgcaacttcttcatcttcaacttgtact 334  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  260 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 319  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  277 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 331  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  260 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 319  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  85 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 184  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  185 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 239  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 331
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  202 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 301  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  302 gcaattgcaacttcttcatcttcaacttgt 331  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17443583 - 17443537
Alignment:
Q  1 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 47  Q
    ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443583 aaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  1 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 53  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

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Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  260 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 319  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4001 - 4047
Alignment:
Q  1 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 47  Q
    ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  4001 aaacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

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