View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3037_low_14 (Length: 350)
Name: NF3037_low_14
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 21612642 - 21612293
Alignment:
| Q |
1 |
tgataaaagagagaatttggtgagcataaatttgtgacattacttgttacaaaccatgataccctgagggaatctttaaccatgttgcagtcgaaaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21612642 |
tgataaaagagagaatttggtgagcataaatttgtgacattacttgttacaaaccatgataccctgagggaatctttaaccatgttgcagtcgaaaaaat |
21612543 |
T |
|
| Q |
101 |
caaattgacaagatgactcctccagtttgcaaacactcttccagcatgcttcttgtctttcaattgatagaagataccaacaagcccctaaaaccttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21612542 |
caaattgacaagatgactcctccagtttgcaaacactcttccagcatgcttcttgtctttcaattgatagaagataccaacaagcccctaaaaccttcaa |
21612443 |
T |
|
| Q |
201 |
cagagaaatatgagttcagtatataatgtattagtaatgcattggtaagatacacaattgcagccgcatttgtctgcatttcataacgtaacattgcagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21612442 |
cagagaaatatgagttcagtatataatgtattagtaatgcattggtaagatacacaattgcagccgcatttgtctgcatttcataacgtaacattgcagc |
21612343 |
T |
|
| Q |
301 |
tataatttaaaagaaaaactgaaaagactctaatatgtgatgatgtccat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21612342 |
tataatttaaaagaaaaactgaaaagactctaatatgtgacaatgtccat |
21612293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University