View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_low_15 (Length: 316)

Name: NF3037_low_15
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_low_15
NF3037_low_15
[»] chr4 (5 HSPs)
chr4 (1-298)||(21833106-21833403)
chr4 (71-177)||(553759-553865)
chr4 (1-163)||(7225125-7225286)
chr4 (113-163)||(8186323-8186373)
chr4 (115-175)||(661902-661962)
[»] chr7 (3 HSPs)
chr7 (3-298)||(10615645-10615940)
chr7 (2-140)||(10169037-10169175)
chr7 (2-140)||(10176562-10176700)
[»] chr1 (3 HSPs)
chr1 (2-160)||(19467398-19467556)
chr1 (2-156)||(7555129-7555283)
chr1 (231-271)||(30827961-30828001)
[»] chr6 (3 HSPs)
chr6 (71-298)||(6417092-6417319)
chr6 (70-264)||(7993412-7993606)
chr6 (149-218)||(6588179-6588248)
[»] chr3 (2 HSPs)
chr3 (3-298)||(13469478-13469773)
chr3 (71-126)||(51763391-51763446)
[»] scaffold1155 (1 HSPs)
scaffold1155 (111-263)||(1753-1902)
[»] scaffold0345 (1 HSPs)
scaffold0345 (111-263)||(8314-8463)
[»] scaffold0105 (1 HSPs)
scaffold0105 (111-263)||(30516-30665)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 21833403 - 21833106
Alignment:
1 cgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaa 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||     
21833403 cgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaagtagtaat 21833304  T
101 gttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21833303 gttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacgg 21833204  T
201 agaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggatt 298  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
21833203 agaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagaggggacggatgagagggcgtgttggatt 21833106  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 553759 - 553865
Alignment:
71 ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg 170  Q
    |||||| | ||||||||||||||| |||| |||||| |  ||| |||||||||||| |||||||||||||||||| | ||||| || ||||||  ||| |    
553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgagg 553858  T
171 ttcaatg 177  Q
    |||||||    
553859 ttcaatg 553865  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 7225286 - 7225125
Alignment:
1 cgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaa 100  Q
    |||||||||||||||| |||||||| ||| |||||||||||| ||||||| || ||| |  |  || | ||||||| | ||||||||||||||| ||||     
7225286 cgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgaca-gaataaatgtggaacatgtgagagaggtcaaagttgtaat 7225188  T
101 gttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga 163  Q
     ||||| | || | || ||||||||  ||| |||||| ||| ||| || |||||||| |||||    
7225187 attttgagaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaagtga 7225125  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 8186373 - 8186323
Alignment:
113 aactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga 163  Q
    ||||||||| |||| ||| ||||||||||||||||| |||| |||||||||    
8186373 aactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga 8186323  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 661902 - 661962
Alignment:
115 ctcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaa 175  Q
    ||||||| ||||  ||||||||||||| || |||||||| |||||||||| |||| |||||    
661902 ctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgattttcaa 661962  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 10615645 - 10615940
Alignment:
3 agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt 102  Q
    ||||||||||| || |||||||||||  | || |||||||| ||| |  ||||||| ||||| ||   |||||||| ||||||||||||||| ||||  |    
10615645 agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct 10615744  T
103 tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag 202  Q
    |||| |  ||| |||| ||||||| ||||||||  ||||||| |||||| ||||| |||||  ||||||||||||||||||||||||||||||  |||||    
10615745 tttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggag 10615844  T
203 aaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggatt 298  Q
    |||   ||| ||||||||||||||||| | |||||| |||||  |||| || ||||| ||||| |||||| | |  | || |||||||||||||||    
10615845 aagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagaggaggcaaaggaaagggcgtgttggatt 10615940  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10169175 - 10169037
Alignment:
2 gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag 101  Q
    ||||||||| ||||| || ||||||||  |||| || |||| |||||| ||||| |||| | ||||   |||||||| |||||||||||||||  |||      
10169175 gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata 10169076  T
102 ttttgtgcaaaaactcgcaacccatctgcgggaatggtg 140  Q
    ||||| |  |||||||||||||||| |||||||||||||    
10169075 ttttgagagaaaactcgcaacccatttgcgggaatggtg 10169037  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10176700 - 10176562
Alignment:
2 gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag 101  Q
    ||||||||| ||||| || ||||||||  |||| || |||| |||||| ||||| |||| | ||||   |||||||| |||||||||||||||  |||      
10176700 gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata 10176601  T
102 ttttgtgcaaaaactcgcaacccatctgcgggaatggtg 140  Q
    ||||| |  |||||||||||||||| |||||||||||||    
10176600 ttttgagagaaaactcgcaacccatttgcgggaatggtg 10176562  T

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Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 19467556 - 19467398
Alignment:
2 gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag 101  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||  |||||   | |||||| ||||||||||||||| ||||      
19467556 gagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttgtaata 19467457  T
102 ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgag 160  Q
    ||||| |  |||||||||||||||| ||||||||||||| || ||||||||||| ||||    
19467456 ttttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgag 19467398  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 7555129 - 7555283
Alignment:
2 gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag 101  Q
    ||||||||||||||| |||||||||||  | ||||| |||| |||| || |||||| |  | | ||| ||||||||| ||| ||||| ||||| ||||      
7555129 gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaata 7555228  T
102 ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatat 156  Q
    ||||| |  ||| ||||||| |||  ||| || |||||||||| |||||| ||||    
7555229 ttttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaatat 7555283  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 30827961 - 30828001
Alignment:
231 gagaggttaagggaggtaagattggtgaaccttttgaagag 271  Q
    |||||||  |||||||| |||||||||||||||||||||||    
30827961 gagaggtcgagggaggtgagattggtgaaccttttgaagag 30828001  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 298
Target Start/End: Original strand, 6417092 - 6417319
Alignment:
71 ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg 170  Q
    |||||||| ||||||||||||||| |||   ||||| |  ||| |||| ||||||| | ||||||  ||||||| |||||||||||| |||||  |||||    
6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatgtgatg 6417191  T
171 ttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaaga 270  Q
    ||||||||||| ||||||||||||| |||||||||    || ||||| || || ||||| | |||||| |||||  |||| || ||||| ||||| ||||    
6417192 ttcaatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaaga 6417291  T
271 ggggacggatgagagggcgtgttggatt 298  Q
    || |||  | || |||||||||||||||    
6417292 ggcgacaaaggaaagggcgtgttggatt 6417319  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 264
Target Start/End: Complemental strand, 7993606 - 7993412
Alignment:
70 tggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgat 169  Q
    ||||||||  ||||||||||||| | |||| |||||| |||||  ||||||| ||||  ||||||| | ||  || || ||||||||| || ||  ||||    
7993606 tggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgat 7993507  T
170 gttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttt 264  Q
    ||||||||||||||||  ||||||||  || ||||  ||||| |||||||  ||| ||   |||||||| |||||| |||| || ||||| ||||    
7993506 gttcaatgatgggaaagtagagatttcccgcagaaacttgtcaaggtcacaatggtagttcgagaggttgagggagttaaggttagtgaatcttt 7993412  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 6588248 - 6588179
Alignment:
149 ggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtca 218  Q
    ||||| |||||||||  |||| ||||||| |||||||||||||||||| |  ||||||| ||||||||||    
6588248 ggagagattgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtca 6588179  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 13469773 - 13469478
Alignment:
3 agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt 102  Q
    |||||||| ||||| || ||||||||  | || |||||||||||| || ||||||||||||||||   |||||||| |||||||||||  || |||   |    
13469773 agttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgtattct 13469674  T
103 tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag 202  Q
    |||| |  ||| |||| ||||||| ||| ||||  ||||||| |||||||| ||| |||||  ||||||||||||||| ||| ||||||||||  |||||    
13469673 tttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtgatgtgatgttcaatgatgagaagcgagagattttgcggag 13469574  T
203 aaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggatt 298  Q
    |||   ||| ||||| || |||||||| | |||||| || ||  |||| || ||||| ||||| |||||| |||  | || |||| ||||||||||    
13469573 aagagcgtcaaggtccccatggaagcgtgtgaggttgagtgaattaaggtttgtgaatcttttaaagaggcgacaaaggaaagggtgtgttggatt 13469478  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 51763446 - 51763391
Alignment:
71 ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccat 126  Q
    |||||||| |||||| |||||||| ||||  ||||||| |||||||||||||||||    
51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccat 51763391  T

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Target: scaffold1155 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 1902 - 1753
Alignment:
111 aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt 210  Q
    ||||||||||||||||||||||||||  |||||| || ||||| |||||||||  ||| |||||   |||||||||||||||||| | |||| ||   ||    
1902 aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt 1806  T
211 cgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctt 263  Q
     |||||||| || | | |  |||||||||||||||||||| || |||||||||    
1805 tgaggtcactgttgtaacacgagaggttaagggaggtaaggtttgtgaacctt 1753  T

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Target: scaffold0345 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 8314 - 8463
Alignment:
111 aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt 210  Q
    ||||||||||||||||||||||||||  |||||| || ||||| |||||||||  ||| |||||   |||||||||||||||||| | |||| ||   ||    
8314 aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt 8410  T
211 cgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctt 263  Q
     |||||||| || | | |  |||||||||||||||||||| || |||||||||    
8411 tgaggtcactgttgtaacacgagaggttaagggaggtaaggtttgtgaacctt 8463  T

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Target: scaffold0105 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 30665 - 30516
Alignment:
111 aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt 210  Q
    ||||||||||||||||||||||||||  |||||| || ||||| |||||||||  ||| |||||   |||||||||||||||||| | |||| ||   ||    
30665 aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt 30569  T
211 cgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctt 263  Q
     |||||||| || | | |  |||||||||||||||||||| || |||||||||    
30568 tgaggtcactgttgtaacacgagaggttaagggaggtaaggtttgtgaacctt 30516  T

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