View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_low_20 (Length: 229)
Name: NF3037_low_20
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 31010371 - 31010591
Alignment:
| Q |
4 |
ttcaagcgaacagatcaatgaaatcgcgaatggtttgcgcgaaagtggtgttagattcttgtggataatgcgtggagaaagttctaagtggaaagatatt |
103 |
Q |
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| T |
31010371 |
ttcaagcgaacagatcgatgaaattgcgaatggtttgtgcgaaagtggtgttagattcttgtggataatgcgaggagaaagttctaagtggaaagatatt |
31010470 |
T |
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| Q |
104 |
tgtggggaaaaagggtttgttttgccatggtgtgaccaattgagagtgttgatgcatagtgctataggtggtttttggtcacattgtgggtggaattcaa |
203 |
Q |
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| T |
31010471 |
tgtggggaaaaagggtttgttttgccatggtgtgaccaattgagagtgttgatgcatagtgctataggtggtttttggtcacattgtgggtggaattcaa |
31010570 |
T |
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| Q |
204 |
ctagagaaggtttgttctgtg |
224 |
Q |
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|||||||||||||||| |||| |
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| T |
31010571 |
ctagagaaggtttgttttgtg |
31010591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 31005831 - 31005902
Alignment:
| Q |
130 |
atggtgtgaccaattgagagtgttgatgcatagtgctataggtggtttttggtcacattgtgggtggaattc |
201 |
Q |
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| T |
31005831 |
atggtgtaaccaattgagagtgttgtcacattcttctattggtggattttggtcacattgtggttggaattc |
31005902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 32075170 - 32075096
Alignment:
| Q |
130 |
atggtgtgaccaattgagagtgttgatgcatagtgctataggtggtttttggtcacattgtgggtggaattcaac |
204 |
Q |
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| T |
32075170 |
atggtgtgaccaattgagagttttgtcacatccttctattggtggattttggtctcattgtggttggaattcaac |
32075096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 26785545 - 26785653
Alignment:
| Q |
94 |
gaaagatatttgtggggaaaaagggtttgttttgccatggtgtgaccaattgagagtgttgatgcatagtgctataggtggtttttggtcacattgtggg |
193 |
Q |
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|||| |||| |||||| ||| ||||||||| || ||||||||||||||||||| || ||| | ||| | |||||||||||| |||| |||||||||| |
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| T |
26785545 |
gaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagggtattgttacatccttctataggtggttattggacacattgtggt |
26785644 |
T |
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| Q |
194 |
tggaattca |
202 |
Q |
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||||||||| |
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| T |
26785645 |
tggaattca |
26785653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 26765443 - 26765550
Alignment:
| Q |
94 |
gaaagatatttgtggggaaaaagggtttgttttgccatggtgtgaccaattgagagtgttgatgcatagtgctataggtggtttttggtcacattgtggg |
193 |
Q |
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| T |
26765443 |
gaaacatatgtgtgggaaaatggggtttgttgtgccatggtgtgaccaattgacggtattgtcacatccttctataggtggttattggacacattgtggt |
26765542 |
T |
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| Q |
194 |
tggaattc |
201 |
Q |
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|||||||| |
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| T |
26765543 |
tggaattc |
26765550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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