View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_low_21 (Length: 227)
Name: NF3037_low_21
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 31010055 - 31010275
Alignment:
| Q |
7 |
attttccacttcatgatgcaagcttacgcagccgtagattgttagagttagctttgaataacatgccatggatgaagaaagcacaatatctattattccc |
106 |
Q |
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| T |
31010055 |
attttccacttcatgatgcaagcttacgcagccgtagattgttagagttagctttgaataacatgccatggatgaagaaagcacaatatctattattccc |
31010154 |
T |
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| Q |
107 |
ttccatatatgaaattgagcctcaagcaattgatgttttgagagaagaattttctataccaatttacacaattggacctactataccgtattttagtcgc |
206 |
Q |
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| T |
31010155 |
ttccatatatgaaattgagcctcaagcaattgatgttttaagagaagaattttctataccaatttacacaattggacctaccataccttattttagtcac |
31010254 |
T |
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| Q |
207 |
ggccaaattacctctctaagc |
227 |
Q |
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| T |
31010255 |
aaccaaattgcctctctaagc |
31010275 |
T |
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