View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_low_22 (Length: 224)

Name: NF3037_low_22
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_low_22
NF3037_low_22
[»] chr4 (2 HSPs)
chr4 (118-208)||(55909822-55909912)
chr4 (16-53)||(55909977-55910014)
[»] chr2 (1 HSPs)
chr2 (122-208)||(25199500-25199586)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 55909912 - 55909822
Alignment:
Q  118 ctgacctagctgaaatgcaagcagagacagctgaggggaataattatggcagagttgaagttgcgacggcagggttacgaatggagaaaac 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55909912 ctgacctagctgaaatgcaagcagagacggctgaggggaataattatggcagagttgaagttgcgacggcagggttacgaatggagaaaac 55909822  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 55910014 - 55909977
Alignment:
Q  16 gtgttagagcaactttgtgtttttctcatccacacaag 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55910014 gtgttagagcaactttgtgtttttctcatccacacaag 55909977  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 25199586 - 25199500
Alignment:
Q  122 cctagctgaaatgcaagcagagacagctgaggggaataattatggcagagttgaagttgcgacggcagggttacgaatggagaaaac 208  Q
    |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |   ||| || |||||||||||||    
T  25199586 cctagctgaaatgcaagcagagacggctgaggggaatagttacggcagagttgaagttgcgatgatggggataagaatggagaaaac 25199500  T

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