View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_low_24 (Length: 213)
Name: NF3037_low_24
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 35319291 - 35319484
Alignment:
| Q |
1 |
tcaccgctgcagccgaccttgaagaccagaaaatccgtcggatgagacgtgccctcgactcctcagacgttgaactagtgaaactcatggtaatgggaga |
100 |
Q |
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| T |
35319291 |
tcaccgctgcagccgaccttgaagaccagaaaatccgtcggatgagacgtgccctcgactcctcagacgttgaactagtgaaactcatggtaatgggaga |
35319390 |
T |
|
| Q |
101 |
aggcctaaacctcgatgaagcattggcattaccttatgccgttgagaattgcagtagagaagttgtgaaagccttattggaactcggtgcagcc |
194 |
Q |
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| T |
35319391 |
aggcctaaacctcgatgaagcattggcattaccttatgccgttgagaattgcagtagagaagttgtgaaagccttattggaactcggtgcagcc |
35319484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 19887832 - 19887674
Alignment:
| Q |
15 |
gaccttgaagaccagaaaatccgtcggatgagacgtgccctcgactcctcagacgttgaactagtgaaactcatggtaatgggagaaggcctaaacctcg |
114 |
Q |
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||||| ||||||||||| ||||| | |||||||| ||||| |||||||| || || |||||||| ||||||||||| |||||||||||||||||||| | |
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| T |
19887832 |
gacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggcctaaaccttg |
19887733 |
T |
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| Q |
115 |
atgaagcattggcattaccttatgccgttgagaattgcagtagagaagttgtgaaagcc |
173 |
Q |
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|||||||||||||||||| ||||| ||||||||||| || ||||||| ||||||||| |
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| T |
19887732 |
atgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagcc |
19887674 |
T |
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