View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_low_25 (Length: 211)

Name: NF3037_low_25
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_low_25
NF3037_low_25
[»] chr3 (4 HSPs)
chr3 (29-196)||(37776901-37777068)
chr3 (55-165)||(45779541-45779651)
chr3 (113-186)||(8087922-8087995)
chr3 (85-165)||(53581124-53581204)
[»] chr1 (2 HSPs)
chr1 (33-186)||(20491269-20491422)
chr1 (108-165)||(5212891-5212948)
[»] chr7 (5 HSPs)
chr7 (48-195)||(47294859-47295005)
chr7 (48-165)||(11567743-11567860)
chr7 (48-165)||(18807264-18807381)
chr7 (49-165)||(23834624-23834740)
chr7 (99-131)||(24789108-24789140)
[»] chr4 (3 HSPs)
chr4 (35-186)||(17778040-17778191)
chr4 (48-165)||(53708350-53708467)
chr4 (113-186)||(32663459-32663532)
[»] chr2 (7 HSPs)
chr2 (35-186)||(27634909-27635060)
chr2 (48-165)||(13911832-13911949)
chr2 (48-154)||(26510257-26510363)
chr2 (113-178)||(10943998-10944063)
chr2 (113-178)||(10949867-10949932)
chr2 (113-186)||(26370228-26370300)
chr2 (48-165)||(43680016-43680132)
[»] chr6 (1 HSPs)
chr6 (48-165)||(19110532-19110649)
[»] chr8 (2 HSPs)
chr8 (48-165)||(26381512-26381629)
chr8 (33-93)||(10543823-10543883)
[»] scaffold0250 (1 HSPs)
scaffold0250 (114-186)||(21416-21488)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 37776901 - 37777068
Alignment:
Q  29 ctaccaaccactctctttacatccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  37776901 ctaccaaccactctctttacatccagctcaaaatcgataggtcccagatcaagatcatgaacccaatccaacgctgaaaataaaccaagagcttctccaa 37777000  T
Q  129 tatgtacttcacagattggactaaactactcagttttgacaaggagaaaagcaccatgattgtctctg 196  Q
    ||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37777001 tacatacttcatagattggactaaactactcagttttgacaaggagaaaagcaccatgattgtctctg 37777068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 45779651 - 45779541
Alignment:
Q  55 ctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattggactaaac 154  Q
    ||||||||| ||||| || ||||||| | | |||||||| || |  || || |||||||||||||||||||| ||||| |||||||| || |||||||||    
T  45779651 ctcaaaatccataggaccaagattaaactcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcggactaaac 45779552  T
Q  155 tactcagtttt 165  Q
     | ||||||||    
T  45779551 cattcagtttt 45779541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 8087995 - 8087922
Alignment:
Q  113 ccaagagcttctccaatatgtacttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
    |||||||||||||||||||| |||||||| || ||||||| | | ||| ||||| |||||| ||||| ||||||    
T  8087995 ccaagagcttctccaatatgaacttcacatatgggactaacccaatcaattttggcaaggacaaaagtaccatg 8087922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 53581204 - 53581124
Alignment:
Q  85 atgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattggactaaactactcagtttt 165  Q
    ||||||||| ||||| ||||| || || ||||||||||| |||| |||||| ||||||| | || ||||| | ||||||||    
T  53581204 atgaacccattccaaagctgataacaatccaagagcttcaccaacatgtacctcacagactagagtaaaccattcagtttt 53581124  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 20491422 - 20491269
Alignment:
Q  33 caaccactctctttacatccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatg 132  Q
    |||||||||||||  |||||| |||||| || |||||||| | ||| ||| || | ||||| || |  |||||||  || ||||||||||||||||||||    
T  20491422 caaccactctcttcgcatccatctcaaagtcaataggtcccaaattgagctcacgcacccactctagtgctgaaatcaacccaagagcttctccaatatg 20491323  T
Q  133 tacttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
     |||||||| || ||||||||| | ||||||||| |||||| ||||| ||||||    
T  20491322 aacttcacatatgggactaaaccaatcagttttggcaaggacaaaagtaccatg 20491269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 5212948 - 5212891
Alignment:
Q  108 ataaaccaagagcttctccaatatgtacttcacagattggactaaactactcagtttt 165  Q
    ||||||||||||||||||| ||||| |||||||| || ||||||||| | ||||||||    
T  5212948 ataaaccaagagcttctcctatatgaacttcacatatcggactaaaccattcagtttt 5212891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 47295005 - 47294859
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| |||||| || |||| ||| | ||||||  ||||||| || ||| | | ||||||||||| |||||||||| |||||||||||||||| |||||    
T  47295005 catccaactcaaagtcaatagatcccaaattaagttcatgaactcattcctaagttgaaaataaactaagagcttcttcaatatgtacttcacaaattgg 47294906  T
Q  148 actaaactactcagttttgacaaggagaaaagcaccatgattgtctct 195  Q
    ||||||| ||| ||||||  |||||| |||| ||| ||| ||||||||    
T  47294905 actaaaccactaagtttttgcaaggacaaaa-cactatgtttgtctct 47294859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 11567743 - 11567860
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || ||||||||| | |||||||| || |  || || |||||||||||||||||||| ||||| |||||||| || ||    
T  11567743 catccatctcaaaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcgg 11567842  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  11567843 actaaaccattcagtttt 11567860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 18807381 - 18807264
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || || |||||| | |||||||| || || || || |||||||||||||||||||| ||||| |||||||| |  ||    
T  18807381 catccatctcaaaatccataggaccaaggttaagctcgtgaacccattctaaagcggataataaaccaagagcttctcctatatgaacttcacataacgg 18807282  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  18807281 actaaaccattcagtttt 18807264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 23834740 - 23834624
Alignment:
Q  49 atccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgga 148  Q
    ||||| ||||||||  ||||| || ||||||||| | |||||||| || |  || || |||||||||||||||| ||  ||||| |||||||| || |||    
T  23834740 atccatctcaaaattcataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttttcgtatatgaacttcacatatcgga 23834641  T
Q  149 ctaaactactcagtttt 165  Q
    |||||| | ||||||||    
T  23834640 ctaaaccattcagtttt 23834624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 24789140 - 24789108
Alignment:
Q  99 acgctgaaaataaaccaagagcttctccaatat 131  Q
    ||||||| |||||||||||||||||||||||||    
T  24789140 acgctgagaataaaccaagagcttctccaatat 24789108  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 17778040 - 17778191
Alignment:
Q  35 accactctctttacatccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgta 134  Q
    |||||||||||  |||||| |||||| || |||||||| |  || ||| |||| ||||| || |  |||||||  || |||||||||||||||||||| |    
T  17778040 accactctcttcgcatccatctcaaagtcaataggtcccaagttgagctcatgcacccactctagtgctgaaatcaacccaagagcttctccaatatgaa 17778139  T
Q  135 cttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
    ||||||| || ||||||||| | ||||||||| |||||| ||||| ||||||    
T  17778140 cttcacatatgggactaaaccaatcagttttggcaaggacaaaagtaccatg 17778191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 53708350 - 53708467
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || ||||||||| | |||||||| |  |  || || |||||||||||||||||||| ||||| |||||||| || ||    
T  53708350 catccatctcaaaatccataggaccaagattaagctcgtgaacccattgtagagcagataataaaccaagagcttctcctatatgaacttcacatatcgg 53708449  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  53708450 actaaaccattcagtttt 53708467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 32663532 - 32663459
Alignment:
Q  113 ccaagagcttctccaatatgtacttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
    |||| ||||||||||||||| |||||||| || ||||||||| | |||||||||  ||||| ||||| ||||||    
T  32663532 ccaaaagcttctccaatatgaacttcacatatgggactaaaccaatcagttttggtaaggacaaaagtaccatg 32663459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 27635060 - 27634909
Alignment:
Q  35 accactctctttacatccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgta 134  Q
    ||||||||||| ||||||| |||||| || |||||||| |  || ||| |||| ||||| || |  |||||||  || |||||||||||| ||||||| |    
T  27635060 accactctcttcacatccatctcaaagtcaataggtcccaagttgagctcatgcacccactctagtgctgaaatcaacccaagagcttcttcaatatgaa 27634961  T
Q  135 cttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
    ||||||| || ||||||||| | ||||||||| |||||| ||||| ||||||    
T  27634960 cttcacatatgggactaaaccaatcagttttggcaaggacaaaagtaccatg 27634909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 13911832 - 13911949
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || ||||||||| | |||||||| || |  || || |||||||||||||||||||| ||||| |||||||| || ||    
T  13911832 catccatctcaaaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcgg 13911931  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  13911932 actaaaccattcagtttt 13911949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 26510257 - 26510363
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||| | || ||||||||| | |||||||| || |  || || ||||||||||||| |||||| ||||| |||||||| || ||    
T  26510257 catccatctcaaaatccataagaccaagattaagctcgtgaacccattctagagcagataataaaccaagagtttctcctatatgaacttcacacatcgg 26510356  T
Q  148 actaaac 154  Q
    |||||||    
T  26510357 actaaac 26510363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 10944063 - 10943998
Alignment:
Q  113 ccaagagcttctccaatatgtacttcacagattggactaaactactcagttttgacaaggagaaaa 178  Q
    |||||||||||||||||||| |||||||| ||  |||||||| | ||||||||| |||||| ||||    
T  10944063 ccaagagcttctccaatatgaacttcacatatgagactaaaccaatcagttttggcaaggacaaaa 10943998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 10949932 - 10949867
Alignment:
Q  113 ccaagagcttctccaatatgtacttcacagattggactaaactactcagttttgacaaggagaaaa 178  Q
    |||||||||||||||||||| |||||||| ||  |||||||| | ||||||||| |||||| ||||    
T  10949932 ccaagagcttctccaatatgaacttcacatatgagactaaaccaatcagttttggcaaggacaaaa 10949867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 26370300 - 26370228
Alignment:
Q  113 ccaagagcttctccaatatgtacttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
    |||||||||||||||||||| |||||||| || | ||||||| | ||||||||| |||||| ||||| ||||||    
T  26370300 ccaagagcttctccaatatg-acttcacatatggaactaaaccaatcagttttggcaaggacaaaaggaccatg 26370228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 43680132 - 43680016
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || ||||||||| | |||||||| || |  ||  | ||||||||||||||||||||  |||| |||||||| || |     
T  43680132 catccatctcaaaatccataggaccaagattaagctcgtgaacccattctagagcatataataaaccaagagcttctcc-ttatgaacttcacaaatcga 43680034  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  43680033 actaaaccattcagtttt 43680016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 19110532 - 19110649
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || ||||||||| | |||||||| || |  || || |||||||||||||||||||| ||||| |||||||| || ||    
T  19110532 catccatctcaaaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcgg 19110631  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  19110632 actaaaccattcagtttt 19110649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 26381512 - 26381629
Alignment:
Q  48 catccagctcaaaatcgataggtcctagattaagcccatgaacccaatccaacgctgaaaataaaccaagagcttctccaatatgtacttcacagattgg 147  Q
    |||||| ||||||||| ||||| || ||||||||| | |||||||| || |  || || |||||| ||||||||||||| ||||| |||||||| || ||    
T  26381512 catccatctcaaaatccataggaccaagattaagctcgtgaacccattctagagcagataataaatcaagagcttctcctatatgaacttcacatatcgg 26381611  T
Q  148 actaaactactcagtttt 165  Q
    ||||||| | ||||||||    
T  26381612 actaaaccattcagtttt 26381629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 10543883 - 10543823
Alignment:
Q  33 caaccactctctttacatccagctcaaaatcgataggtcctagattaagcccatgaaccca 93  Q
    |||||||||||||  |||||| ||||||||| ||||||||||| || ||| |||| |||||    
T  10543883 caaccactctcttcgcatccatctcaaaatcaataggtcctaggttgagctcatgcaccca 10543823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 21488 - 21416
Alignment:
Q  114 caagagcttctccaatatgtacttcacagattggactaaactactcagttttgacaaggagaaaagcaccatg 186  Q
    ||||||||||||||||||| |||||||| || ||||||||| | ||||||||| |||| | ||||| ||||||    
T  21488 caagagcttctccaatatgaacttcacatatgggactaaaccaatcagttttggcaagaacaaaagtaccatg 21416  T

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