View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_low_3 (Length: 495)
Name: NF3037_low_3
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 35028895 - 35028603
Alignment:
| Q |
15 |
attattgagcttaggaatataaataatgactatagttattgcaaaattcattctctgcatgctaagctcaataatttggaagaacataatgttcctaaca |
114 |
Q |
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| T |
35028895 |
attattgagcttaggaatataaataatgactatagttattgcaaaattcattctctgcatgctaagctcaataatttggaagaacataatgttcctaaca |
35028796 |
T |
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| Q |
115 |
tttgtaaggacctggctttacaatatatcaaaggtggtcaatatgcaagagacttggattcaaccaaatctgtgattgaggattacttcaatggtgttaa |
214 |
Q |
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| T |
35028795 |
tttgtaaggacctggctttacaatatatcaaaggtggtcaatatgcaagagacttggattcaaccaaatctgtgattgaggattacttcaatggtgttaa |
35028696 |
T |
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| Q |
215 |
gccatcagaagatggttttgatgttgtattgatagacatagatagcctttttcaatggaatcctcctcattcttccaatttgttactaaggta |
307 |
Q |
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| T |
35028695 |
accatcagaagatggttttgatgttgtgttgatagacatagatagcctttttcaatggaatcctcctcattcttccaatttgttactaaggta |
35028603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 373 - 481
Target Start/End: Complemental strand, 35028537 - 35028430
Alignment:
| Q |
373 |
agtcggaaaacttaaagtcgagacggctcatgatgtatggttttgaatttgtttttgatgtttattttccatactcaaaatttagccgttcgatttgtct |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
35028537 |
agtcggaaaacttaaagtcgagacggctcatgatgtatagttttgaatttgtgtttgatatttattttccatactcaaaatttagccgttcgatttgt-t |
35028439 |
T |
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| Q |
473 |
gactgtgta |
481 |
Q |
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| T |
35028438 |
gactgtgta |
35028430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 36860910 - 36861188
Alignment:
| Q |
16 |
ttattgagcttaggaatataaataatgactatagttattgcaaaattcattctctgcatgctaagctcaataatttggaagaacataatgttcctaacat |
115 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36860910 |
ttattgagcttaggaatattaatgatgactatagttattgcaaaattcattctctgcatgctaagctcaataatttggaagaatataatgttcctaacat |
36861009 |
T |
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| Q |
116 |
ttgtaaggacctggctttacaatatatcaaaggtggtcaatatgcaagagacttggattcaaccaaatctgtgattgaggattacttcaatggtgttaag |
215 |
Q |
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| T |
36861010 |
ttgtaaagacctggctttacaatatatcaaaggtggtcaatatgtaagagacttggattcaacaaaatctgtgattgaggattacttcaatggtgttaaa |
36861109 |
T |
|
| Q |
216 |
ccatcagaagatggttttgatgttgtattgatagacatagatagcctttttcaatggaatcctcctcattcttccaatttgtt |
298 |
Q |
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| T |
36861110 |
ccatcagaagatggtcttgatg-tggcgtcatagacatagatagcctttttcaatggaa---tcctcattcttccaatttgtt |
36861188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 373 - 481
Target Start/End: Original strand, 36861260 - 36861368
Alignment:
| Q |
373 |
agtcggaaaacttaaagtcgagacggctcatgatgtatggttttgaatttgtttttgatgtttattttccatactcaaaatttagccgttcgatttgtct |
472 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||||||| ||||||||||||| || |||||||||||||| |
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| T |
36861260 |
agtcggaaaacttaaagtcgagacggctcatgatgcatagttttgaatttgtgtttgatatttatttttcatactcaaaattcagacgttcgatttgtct |
36861359 |
T |
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| Q |
473 |
gactgtgta |
481 |
Q |
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||||||||| |
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| T |
36861360 |
gactgtgta |
36861368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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