View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3037_low_4 (Length: 492)

Name: NF3037_low_4
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3037_low_4
NF3037_low_4
[»] chr3 (3 HSPs)
chr3 (30-462)||(33801232-33801660)
chr3 (245-358)||(17334198-17334308)
chr3 (249-337)||(54575390-54575478)
[»] chr7 (1 HSPs)
chr7 (245-358)||(47259743-47259853)
[»] chr5 (2 HSPs)
chr5 (245-358)||(9720304-9720414)
chr5 (245-358)||(15930377-15930487)
[»] chr1 (4 HSPs)
chr1 (245-358)||(1801237-1801347)
chr1 (248-337)||(4978450-4978539)
chr1 (248-337)||(23184900-23184989)
chr1 (248-337)||(4972163-4972252)
[»] chr8 (3 HSPs)
chr8 (248-337)||(13535237-13535326)
chr8 (248-337)||(13624777-13624866)
chr8 (248-337)||(45475285-45475374)
[»] chr6 (1 HSPs)
chr6 (249-337)||(19738256-19738344)
[»] chr4 (3 HSPs)
chr4 (248-337)||(15830178-15830267)
chr4 (249-337)||(35464572-35464660)
chr4 (248-337)||(10428716-10428805)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 462
Target Start/End: Original strand, 33801232 - 33801660
Alignment:
Q  30 aatactttctttgaaggatcatatttttaatacgtcgtttgattaaattattttaacagaagttatctgcttttttagaagacatgaattatcatgtttc 129  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801232 aatactttcttttaaggatcatatttttaatacgttgtttgattaaattattttaacagaagttatctgcttttttagaagacatgaattatcatgtttc 33801331  T
Q  130 aagnnnnnnnnn-cttcattgtaaaacagtttttattttcattttaaccttcattaattctcaatttgctattgatgttaatctattaagcatttgtaac 228  Q
    |||          ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33801332 aagtttttcttttcttcattgtaaaacagtttttattttctttttaaccttcagtaattctcaatttgctattgatgttaatctattaagcatttgtaac 33801431  T
Q  229 atggtaaaccccaacccaagtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttata 328  Q
    |||||||||     | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33801432 atggtaaac-----cgcaagtaagacttgaagaacttcaacttttaaaatcttctttctacacaagcaattgtcaccggaataatcaataaaattttata 33801526  T
Q  329 tggaacaataattatattaggaaaacaatctaagtcttttaatacagtcaatatatatttattgtaaaataggaatcgttaaagctgatatgacttctac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33801527 tggaacaataattatattaggaaaacaatctaagtcttttaatacagtcaatatatatttattgtaaaacaggaatcgttaaagctgatatgacttctac 33801626  T
Q  429 attaggagccttcccttcagcttcctgcgtagta 462  Q
    ||||||||||||||||||||||||||||||||||    
T  33801627 attaggagccttcccttcagcttcctgcgtagta 33801660  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 17334198 - 17334308
Alignment:
Q  245 caagtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaataattata 344  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||| |  |||||| |||||| |||||| ||||||||||| ||||||   |||| ||| ||    
T  17334198 caagtaagacttcaacaacttcaattttgaaaaacttctttctgctgaagcaactgtcacaggaatagtcaataaaattctatatg---caatgattgta 17334294  T
Q  345 ttaggaaaacaatc 358  Q
    ||||||||||||||    
T  17334295 ttaggaaaacaatc 17334308  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 54575390 - 54575478
Alignment:
Q  249 taagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    ||||||||||| |||||||||||| |||| ||||||| | |  | ||||||||||| |||||  ||||||||||| |||||| ||||||    
T  54575390 taagacttcaacaacttcaactttgaaaaacttctttatgcggaggcaattgtcacgggaattgtcaataaaattctatatgcaacaat 54575478  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 47259743 - 47259853
Alignment:
Q  245 caagtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaataattata 344  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||| |  |||||| |||||| |||||| ||||||||||| ||||||   |||| ||| ||    
T  47259743 caagtaagacttcaacaacttcaattttgaaaaacttctttctgctgaagcaactgtcacaggaatagtcaataaaattctatatg---caatgattgta 47259839  T
Q  345 ttaggaaaacaatc 358  Q
    ||||||||||||||    
T  47259840 ttaggaaaacaatc 47259853  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 358
Target Start/End: Complemental strand, 9720414 - 9720304
Alignment:
Q  245 caagtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaataattata 344  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||| |  |||||| |||||| |||||| ||||||||||| ||||||   |||| ||| ||    
T  9720414 caagtaagacttcaacaacttcaattttgaaaaacttctttctgctgaagcaactgtcacaggaatagtcaataaaattctatatg---caatgattgta 9720318  T
Q  345 ttaggaaaacaatc 358  Q
    ||||||||||||||    
T  9720317 ttaggaaaacaatc 9720304  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 358
Target Start/End: Complemental strand, 15930487 - 15930377
Alignment:
Q  245 caagtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaataattata 344  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||| |  |||||| |||||| |||||| ||||||||||| ||||||   |||| ||| ||    
T  15930487 caagtaagacttcaacaacttcaattttgaaaaacttctttctgctgaagcaactgtcacaggaatagtcaataaaattctatatg---caatgattgta 15930391  T
Q  345 ttaggaaaacaatc 358  Q
    ||||||||||||||    
T  15930390 ttaggaaaacaatc 15930377  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 1801237 - 1801347
Alignment:
Q  245 caagtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaataattata 344  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||| |  |||||| |||||| |||||| ||||||||||| ||||||   |||| ||| ||    
T  1801237 caagtaagacttcaacaacttcaattttaaaaaacttctttctgctgaagcaactgtcacaggaatagtcaataaaattctatatg---caatgattgta 1801333  T
Q  345 ttaggaaaacaatc 358  Q
    ||||||||||||||    
T  1801334 ttaggaaaacaatc 1801347  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 4978539 - 4978450
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| |||||||||||| |||| ||||||| | |  | |||| |||||| |||||| ||||||||||| |||||| ||||||    
T  4978539 gtaagacttcaacaacttcaactttgaaaaacttctttatgcggaggcaactgtcacgggaatagtcaataaaattctatatgcaacaat 4978450  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 23184989 - 23184900
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| |||||||||||| |||| ||| ||| | |  | |||| |||||| |||||| ||||||||||| |||||| ||||||    
T  23184989 gtaagacttcaacaacttcaactttgaaaaacttttttttgcggaggcaactgtcacgggaatagtcaataaaattctatatgcaacaat 23184900  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 4972163 - 4972252
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||| | |||||||||||| |||| ||| ||| | |  | |||| |||||| |||||| ||||||||||| |||||| ||||||    
T  4972163 gtaagacttcgacaacttcaactttgaaaaacttatttatgcggaggcaactgtcacgggaatagtcaataaaattctatatgcaacaat 4972252  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 13535237 - 13535326
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| |||||||||||| |||| |||||||||||  | |||  |||||| |||||| ||||||||||| |||||| ||||||    
T  13535237 gtaagacttcaacaacttcaactttgaaaaacttctttctacggaggcatctgtcacgggaatagtcaataaaattctatatgcaacaat 13535326  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 13624777 - 13624866
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| |||||||||||| |||| |||||||||||  | |||  |||||| |||||| ||||||||||| |||||| ||||||    
T  13624777 gtaagacttcaacaacttcaactttgaaaaacttctttctacggaggcatctgtcacgggaatagtcaataaaattctatatgcaacaat 13624866  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 45475374 - 45475285
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| |||||||||||| |||| ||||||||| |  | |||| |||||| |||||| ||||||||||| |||||| ||||||    
T  45475374 gtaagacttcaacaacttcaactttgaaaaacttctttctgcggaggcaactgtcacgggaatagtcaataaaattctatatgcaacaat 45475285  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 19738256 - 19738344
Alignment:
Q  249 taagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    ||||||||||| |||||||||||| |||| ||||||||| |  | |||| |||||| |||||| ||||||||||| |||||| ||||||    
T  19738256 taagacttcaacaacttcaactttgaaaaacttctttctgcggaggcaactgtcacgggaatagtcaataaaattctatatgcaacaat 19738344  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 15830178 - 15830267
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| |||||||| ||| |||| |||||||||    | ||||||||||| ||||||  ||||||||||||||||| ||||||    
T  15830178 gtaagacttcaacaacttcaattttgaaaaacttctttctgtggaggcaattgtcacgggaatagccaataaaattttatatgcaacaat 15830267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 35464660 - 35464572
Alignment:
Q  249 taagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    ||||||||||| |||||||||||| |||| ||||||| | |  | |||| |||||| |||||| ||||||||||| |||||| ||||||    
T  35464660 taagacttcaacaacttcaactttgaaaaacttctttttgcggaggcaactgtcacgggaatagtcaataaaattctatatgcaacaat 35464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 10428716 - 10428805
Alignment:
Q  248 gtaagacttcaagaacttcaacttttaaaatcttctttctacataagcaattgtcaccggaataatcaataaaattttatatggaacaat 337  Q
    |||||||||||| | |||||||||| |||| ||||||||| |  | |||| |||||| | |||| ||||||||||| |||||| ||||||    
T  10428716 gtaagacttcaacatcttcaactttgaaaaacttctttctgcggaggcaactgtcacggaaatagtcaataaaattctatatgcaacaat 10428805  T

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