View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037_low_5 (Length: 438)
Name: NF3037_low_5
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037_low_5 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 204 - 437
Target Start/End: Complemental strand, 6329 - 6096
Alignment:
| Q |
204 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
303 |
Q |
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| T |
6329 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
6230 |
T |
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| Q |
304 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgctgcccacaacataaaggggctcattactcgttttcgtattggattgggatgggac |
403 |
Q |
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| T |
6229 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgctgcccacaacataaaggggctcattactcgttttcgtattggattgggatgggac |
6130 |
T |
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| Q |
404 |
tatccaataaggaattcccttcttctttcttttc |
437 |
Q |
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| T |
6129 |
tatccaataaggaattcccttcttctttcatttc |
6096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 184 - 353
Target Start/End: Original strand, 49237921 - 49238090
Alignment:
| Q |
184 |
cagactgcctctttctagatagattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgc |
283 |
Q |
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| T |
49237921 |
cagactgcctatttctagatagattctatggatgatgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccaatgcatgtcgtac |
49238020 |
T |
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| Q |
284 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgctgccc |
353 |
Q |
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| T |
49238021 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgctgccc |
49238090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44285740 - 44285603
Alignment:
| Q |
1 |
tcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcagacttcgctccgcacctttaggtaaagatccccattgtccaatcttcct |
100 |
Q |
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| T |
44285740 |
tcggctaaaaggtcgagtccgagattgggagaagaactagcaagaaatgccgaatttgctccgcatcgttaggtaaagatccccattggccaatcttcct |
44285641 |
T |
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| Q |
101 |
ttaatggatatattcttaaatgtaacttccggtaagaa |
138 |
Q |
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| T |
44285640 |
ttaatggatatattcttcaatgtaacttccggtaagaa |
44285603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 44070274 - 44070410
Alignment:
| Q |
2 |
cggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcagacttcgctccgcacctttaggtaaagatccccattgtccaatcttcctt |
101 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||||||||||| ||| |
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| T |
44070274 |
cggctaaacggctgagtccgagattgggagaagaactagcaagaaatgccgaattcgctccgcattgtaaggtaaagatctccattgtccaatcttgctt |
44070373 |
T |
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| Q |
102 |
taatggatatattcttaaatgtaacttccggtaagaa |
138 |
Q |
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| T |
44070374 |
taatggatatattcttcaatgtaacttctggtaagaa |
44070410 |
T |
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