View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_high_1 (Length: 455)
Name: NF3038_high_1
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 13645980 - 13646409
Alignment:
| Q |
16 |
gttagatagttaagg-tattgatatggagtaatcaaaatgatgacatttgtcaaacaacaaccgttgagatgcaagtgaagggggtacctgaaaacattt |
114 |
Q |
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| T |
13645980 |
gttaaatagttaaggatattgatatggagtaatcaaaatgatgatatttgtcaaacaacaaccgttgagatgcgagtgaagggggtgcctgaaaacattt |
13646079 |
T |
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| Q |
115 |
tgatgcttaagtaagtaagagcgcaagggtgagaggtattgaaaa-tagaaattatgcatcttgtatttgtgatgaagggcgtcttttataggcttactt |
213 |
Q |
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| T |
13646080 |
tgatgcttaagtaag----agcgcaaaggtgagaggtattgaaaaatagaaattatgcatcttgtatttgtgatgaacggcgtcatttataggcttactt |
13646175 |
T |
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| Q |
214 |
ttggagtcattgatcgattgatgaaagttgttagagaatggaggaccatcaatgttcagctccgtacgttacaagtcattgaggtgttacaaaatggttg |
313 |
Q |
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| T |
13646176 |
ttggagtcattgatcgattgatgaaagctgttagagaatggaggaccatcaatgttcaactccgtacgttacaagtcattgaggtgttacaaaatggatg |
13646275 |
T |
|
| Q |
314 |
attcgggctattcgttggaagcattgatgagactgaaggattcaagatacttagtaaagtagatgagtttgggccataatgtttatttgggtcttgtagg |
413 |
Q |
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| T |
13646276 |
attctagctattcgttcgaagcattgatgagactaaaggattcaaggtacttagtaaagtagatgagtttgggccataatgtttatttgggtcttgtagg |
13646375 |
T |
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| Q |
414 |
cctgaatttgataacatttcagcttttacctttg |
447 |
Q |
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| T |
13646376 |
cctgaatttgataacatttcagcttttatctttg |
13646409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 356
Target Start/End: Original strand, 31324784 - 31324981
Alignment:
| Q |
160 |
tagaaattatgcatcttgtatttgtgatgaagggcgtctttt-ataggcttacttttggagtcattgatcgattgatgaaagttgttagagaatggagga |
258 |
Q |
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| T |
31324784 |
tagaaattgtgtaccttatatttgtgatgaagggtttctttttataggcttagttttggagttgttgatcagttgatcaaggtcgttacagaatggtgca |
31324883 |
T |
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| Q |
259 |
ccatcaatgttcagctccgtacgttacaagtcattgaggtgttacaaaatggttgattcgggctattcgttggaagcattgatgagactgaaggattc |
356 |
Q |
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| T |
31324884 |
ccatcaatgtcgagctccgtctagtacaagtcgttgaggcgttaccaagtggaagattatggctagccgttggaggcattgatgagacagaaggattc |
31324981 |
T |
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