View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_high_14 (Length: 247)
Name: NF3038_high_14
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_high_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1248958 - 1249204
Alignment:
| Q |
1 |
attccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggt |
100 |
Q |
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| T |
1248958 |
attccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggt |
1249057 |
T |
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| Q |
101 |
cctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttc |
200 |
Q |
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| T |
1249058 |
cctatccctgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcgggttccggcttacctcggccgccttc |
1249157 |
T |
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| Q |
201 |
ctaagcttgtaggcctagatgtaagccacaaccagctctgtgatcct |
247 |
Q |
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| T |
1249158 |
ctaagcttgtaggcctagatgtgagccacaaccagctttgtggtcct |
1249204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 12096299 - 12096105
Alignment:
| Q |
10 |
cctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatcccc |
109 |
Q |
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| T |
12096299 |
cctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccct |
12096200 |
T |
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| Q |
110 |
gattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaa |
204 |
Q |
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| T |
12096199 |
gattactttagcaaacttaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaa |
12096105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 12079655 - 12079465
Alignment:
| Q |
14 |
cctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccccgatt |
113 |
Q |
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|||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| ||||||||||| |||| |
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| T |
12079655 |
cctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccctgatt |
12079556 |
T |
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| Q |
114 |
actttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaa |
204 |
Q |
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| T |
12079555 |
actttagcaaactaaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattccagcttacctcggccgccttcctaa |
12079465 |
T |
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