View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_high_19 (Length: 237)
Name: NF3038_high_19
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 31843987 - 31844174
Alignment:
| Q |
34 |
ctctgacatattaatccttaaaaa-cctaacatatttaatcctcaaaactaagtagtagttaacaacatagtgatgtgaaaccttgtaattgtgacctaa |
132 |
Q |
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| T |
31843987 |
ctctgacatattaatccttaaaaaacctaacatatttaatccttaaaactat-tagtagttaacaacatagtgatgtgaaaccttgtaactgtgacctaa |
31844085 |
T |
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| Q |
133 |
ttagagtaagtagtagtacccaaacgaagctcaagatccaagttatcataatctcctggcaaacctatctccaaatccatccttaaaat |
221 |
Q |
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| T |
31844086 |
ttagagtaagtagtagtacccaaacgaagctcaagatccaagttatcataatctcctggcaaacctatctccaaatccatccttaaaat |
31844174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31843921 - 31843956
Alignment:
| Q |
1 |
actaattcagatgctaaagaaagtaaacataaactc |
36 |
Q |
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| T |
31843921 |
actaattcagatgctaaagaaagtaaacataaactc |
31843956 |
T |
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