View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_high_2 (Length: 431)
Name: NF3038_high_2
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 43290382 - 43289981
Alignment:
| Q |
13 |
cagagagcaaagttacatcatcgcatacaccctcctccgactccaacgcttgaataaacacatcaatcgcttcaaccgggcaattattttgaacatacgc |
112 |
Q |
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| T |
43290382 |
cagagagcaaagttacatcatcgcatacaccctcctccgactccaacgcttgaataaacacatcaatcgcttcaaccgggcaattattttgaacatacgc |
43290283 |
T |
|
| Q |
113 |
aacaatcatagtattccaaatctcagtatttttattcaaacatcgatcaaaaaccattcgcgcataatccatacaaccaacatcagaaaacataagtatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290282 |
aacaatcatagtattccaaatctcagtatttttattcaaacatcgatcaaaaaccattcgcgcataatccatacaaccaacatcagaaaacataagtatc |
43290183 |
T |
|
| Q |
213 |
gcagagcttacaacaaacacatcactaacatactgatcaccaaatttcctcataaacccataaaacatcttcacagttctagaatcacccaatttcgaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290182 |
gcagagcttacaacaaacacatcactaacatactgatcaccaaatttcctcataaacccataaaacatcttcacagttctagaatcacccaatttcgaca |
43290083 |
T |
|
| Q |
313 |
aagcaggaaaaagattcacaaaagtaaccggactcggcataacagattgattaatcatattagcaaatgcctcaaccgcttgaggataacgattcatctt |
412 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290082 |
aagcaggaaaaagattcacaaaagtaaccggactaggcataacagattgattaatcatattagcaaatgcctcaaccgcttgaggataacgattcatctt |
43289983 |
T |
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| Q |
413 |
aa |
414 |
Q |
| |
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|| |
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| T |
43289982 |
aa |
43289981 |
T |
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