View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3038_high_5 (Length: 357)

Name: NF3038_high_5
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3038_high_5
NF3038_high_5
[»] chr3 (17 HSPs)
chr3 (145-348)||(20795295-20795498)
chr3 (145-348)||(30160446-30160649)
chr3 (167-297)||(5750601-5750733)
chr3 (167-297)||(5787560-5787692)
chr3 (178-296)||(37197829-37197946)
chr3 (178-297)||(6445165-6445282)
chr3 (178-296)||(20919268-20919385)
chr3 (178-296)||(20928230-20928347)
chr3 (238-350)||(37187502-37187612)
chr3 (312-346)||(2765973-2766007)
chr3 (252-346)||(9270699-9270792)
chr3 (312-346)||(50246546-50246580)
chr3 (165-230)||(2766088-2766153)
chr3 (99-131)||(10027340-10027372)
chr3 (99-131)||(42392259-42392291)
chr3 (99-132)||(36144377-36144410)
chr3 (103-131)||(22505412-22505440)
[»] chr6 (19 HSPs)
chr6 (105-348)||(21992555-21992799)
chr6 (173-297)||(33452320-33452444)
chr6 (173-297)||(13705495-13705617)
chr6 (173-245)||(15654083-15654155)
chr6 (173-245)||(15664036-15664108)
chr6 (178-296)||(4856915-4857034)
chr6 (178-297)||(30890054-30890175)
chr6 (178-346)||(11550248-11550417)
chr6 (251-348)||(4749520-4749617)
chr6 (173-346)||(27434709-27434881)
chr6 (243-289)||(15654187-15654233)
chr6 (249-289)||(15664142-15664182)
chr6 (312-348)||(33452249-33452285)
chr6 (99-130)||(4749243-4749274)
chr6 (312-346)||(32681527-32681561)
chr6 (99-128)||(27428653-27428682)
chr6 (178-206)||(1608073-1608101)
chr6 (316-348)||(13705427-13705459)
chr6 (99-131)||(15888574-15888606)
[»] scaffold0490 (1 HSPs)
scaffold0490 (99-348)||(9080-9330)
[»] chr1 (15 HSPs)
chr1 (162-348)||(19095344-19095530)
chr1 (227-348)||(8313968-8314088)
chr1 (167-346)||(45914958-45915138)
chr1 (173-346)||(46514368-46514540)
chr1 (178-247)||(8106928-8106997)
chr1 (178-247)||(8111574-8111643)
chr1 (178-230)||(15535296-15535348)
chr1 (167-346)||(22544110-22544288)
chr1 (250-296)||(3417383-3417429)
chr1 (98-132)||(41322437-41322471)
chr1 (178-247)||(8314029-8314098)
chr1 (99-132)||(16995447-16995480)
chr1 (312-346)||(15535181-15535215)
chr1 (103-132)||(40700108-40700137)
chr1 (312-348)||(11440957-11440993)
[»] chr8 (52 HSPs)
chr8 (173-297)||(15605962-15606086)
chr8 (173-297)||(15614315-15614439)
chr8 (173-297)||(15648131-15648255)
chr8 (178-297)||(10894547-10894666)
chr8 (173-297)||(15624343-15624467)
chr8 (178-292)||(15624165-15624279)
chr8 (173-291)||(15637492-15637610)
chr8 (178-292)||(15647953-15648067)
chr8 (173-297)||(15637302-15637426)
chr8 (173-291)||(15637676-15637794)
chr8 (173-292)||(15613808-15613928)
chr8 (173-297)||(15637119-15637243)
chr8 (178-297)||(16250411-16250529)
chr8 (173-292)||(15636942-15637060)
chr8 (178-284)||(20540820-20540926)
chr8 (181-292)||(15605455-15605567)
chr8 (173-297)||(15614133-15614256)
chr8 (145-247)||(38050219-38050321)
chr8 (173-266)||(15605628-15605721)
chr8 (173-297)||(15605780-15605903)
chr8 (173-266)||(15613981-15614073)
chr8 (226-297)||(15624526-15624597)
chr8 (173-302)||(10895864-10895992)
chr8 (224-297)||(15613469-15613541)
chr8 (194-348)||(287343-287496)
chr8 (173-232)||(15605343-15605402)
chr8 (226-297)||(15648314-15648385)
chr8 (224-297)||(15923611-15923684)
chr8 (224-297)||(15605117-15605188)
chr8 (178-295)||(25113397-25113514)
chr8 (173-232)||(15613696-15613755)
chr8 (178-297)||(17895021-17895138)
chr8 (255-297)||(4930230-4930272)
chr8 (167-346)||(18666790-18666969)
chr8 (178-247)||(23136464-23136533)
chr8 (252-292)||(15923951-15923991)
chr8 (178-348)||(27521102-27521272)
chr8 (173-232)||(15923839-15923898)
chr8 (167-343)||(8362304-8362480)
chr8 (250-295)||(12167179-12167224)
chr8 (250-295)||(12411607-12411652)
chr8 (178-230)||(35136706-35136758)
chr8 (178-268)||(772597-772688)
chr8 (173-232)||(15636830-15636889)
chr8 (97-132)||(19190675-19190710)
chr8 (167-230)||(23689219-23689282)
chr8 (173-346)||(45250949-45251121)
chr8 (250-295)||(16291992-16292037)
chr8 (312-347)||(4930305-4930340)
chr8 (312-346)||(23689104-23689138)
chr8 (179-296)||(23161056-23161172)
chr8 (178-207)||(25063975-25064004)
[»] scaffold0114 (1 HSPs)
scaffold0114 (178-297)||(34291-34410)
[»] chr4 (16 HSPs)
chr4 (173-297)||(37069683-37069805)
chr4 (178-294)||(17461926-17462041)
chr4 (178-348)||(24024-24193)
chr4 (233-348)||(13914684-13914798)
chr4 (255-297)||(13923288-13923330)
chr4 (173-346)||(18066676-18066848)
chr4 (178-346)||(35647971-35648138)
chr4 (252-302)||(14288140-14288190)
chr4 (312-348)||(37069615-37069651)
chr4 (312-347)||(13923218-13923253)
chr4 (99-130)||(55057980-55058011)
chr4 (312-346)||(10780389-10780423)
chr4 (312-346)||(10973998-10974032)
chr4 (97-131)||(13924614-13924648)
chr4 (99-128)||(17990085-17990114)
chr4 (99-128)||(18072875-18072904)
[»] chr5 (7 HSPs)
chr5 (178-297)||(501100-501220)
chr5 (178-297)||(36647960-36648079)
chr5 (167-346)||(27588612-27588791)
chr5 (178-247)||(9663066-9663135)
chr5 (250-348)||(19205849-19205946)
chr5 (250-295)||(29857767-29857812)
chr5 (312-348)||(501252-501288)
[»] scaffold0504 (1 HSPs)
scaffold0504 (15-100)||(9359-9444)
[»] chr2 (12 HSPs)
chr2 (173-267)||(11127769-11127864)
chr2 (205-348)||(45049526-45049668)
chr2 (167-346)||(21119845-21120024)
chr2 (168-230)||(20103500-20103562)
chr2 (250-295)||(5243259-5243304)
chr2 (99-131)||(5244826-5244858)
chr2 (314-346)||(24972140-24972172)
chr2 (167-219)||(24972272-24972324)
chr2 (178-230)||(41747366-41747418)
chr2 (312-346)||(20103644-20103678)
chr2 (205-243)||(31300006-31300044)
chr2 (104-132)||(14876037-14876065)
[»] chr7 (6 HSPs)
chr7 (15-100)||(12024979-12025064)
chr7 (165-346)||(7946432-7946613)
chr7 (179-296)||(29493987-29494104)
chr7 (312-346)||(29494118-29494152)
chr7 (254-295)||(30878825-30878866)
chr7 (104-132)||(48553313-48553341)
[»] scaffold0018 (1 HSPs)
scaffold0018 (182-348)||(67189-67354)
[»] scaffold0022 (1 HSPs)
scaffold0022 (178-348)||(101102-101272)
[»] scaffold0155 (2 HSPs)
scaffold0155 (167-296)||(26657-26786)
scaffold0155 (315-346)||(26805-26836)
[»] scaffold0003 (2 HSPs)
scaffold0003 (173-346)||(52482-52654)
scaffold0003 (99-128)||(58681-58710)
[»] scaffold0289 (1 HSPs)
scaffold0289 (173-346)||(22068-22239)
[»] scaffold0059 (2 HSPs)
scaffold0059 (178-296)||(67185-67302)
scaffold0059 (178-296)||(75290-75407)
[»] scaffold0191 (1 HSPs)
scaffold0191 (179-302)||(17020-17139)
[»] scaffold0061 (1 HSPs)
scaffold0061 (101-132)||(30978-31009)
[»] scaffold0017 (1 HSPs)
scaffold0017 (101-132)||(167783-167814)
[»] scaffold0200 (1 HSPs)
scaffold0200 (103-131)||(3119-3147)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 145 - 348
Target Start/End: Complemental strand, 20795498 - 20795295
Alignment:
Q  145 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 244  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20795498 aaagtacacgtggcaagcttatattctccatcccatttaatgttttcatatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 20795399  T
Q  245 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||    
T  20795398 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatgaatcatgatatgatttttttttctatatatagacaatttgtttttcattattttc 20795299  T
Q  345 atct 348  Q
    ||||    
T  20795298 atct 20795295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 145 - 348
Target Start/End: Original strand, 30160446 - 30160649
Alignment:
Q  145 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 244  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30160446 aaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 30160545  T
Q  245 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||||||||    
T  30160546 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttatttttcattattttc 30160645  T
Q  345 atct 348  Q
    ||||    
T  30160646 atct 30160649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 5750733 - 5750601
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcattt 265  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||    
T  5750733 attccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatgactcattt 5750634  T
Q  266 g-tttttcatgagccaatcaaaatggatcatga 297  Q
    | |||||||||||||||||||||||||||||||    
T  5750633 gctttttcatgagccaatcaaaatggatcatga 5750601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 5787692 - 5787560
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcattt 265  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||    
T  5787692 attccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatgactcattt 5787593  T
Q  266 g-tttttcatgagccaatcaaaatggatcatga 297  Q
    | |||||||||||||||||||||||||||||||    
T  5787592 gctttttcatgagccaatcaaaatggatcatga 5787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 37197829 - 37197946
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| |||||  ||||||| ||    
T  37197829 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttagttttcatcag 37197927  T
Q  278 ccaatcaaaatggatcatg 296  Q
    ||||||||||| |||||||    
T  37197928 ccaatcaaaattgatcatg 37197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 6445282 - 6445165
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| |||   |||| | | | ||||| ||||||| |||||||||||||| ||||| |||||    
T  6445282 catttaatgtttt-ttatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagag-atcatgactcatttattttttatgag 6445185  T
Q  278 ccaatcaaaatggatcatga 297  Q
    ||||||||||| ||||||||    
T  6445184 ccaatcaaaattgatcatga 6445165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 20919268 - 20919385
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||  ||||||  ||    
T  20919268 catttaatgttttcttaccatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgattcatgacacatttagttttcaccag 20919366  T
Q  278 ccaatcaaaatggatcatg 296  Q
    ||||||||||| |||||||    
T  20919367 ccaatcaaaattgatcatg 20919385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 20928230 - 20928347
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||  ||||||  ||    
T  20928230 catttaatgttttcttaccatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgattcatgacacatttagttttcaccag 20928328  T
Q  278 ccaatcaaaatggatcatg 296  Q
    ||||||||||| |||||||    
T  20928329 ccaatcaaaattgatcatg 20928347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 37187502 - 37187612
Alignment:
Q  238 ccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcat 337  Q
    ||||| ||||||| |||| ||||||||| ||||| |||||||||||||||| |||||||| ||||         ||||||||| |||||||| |||||||    
T  37187502 ccaatcaaaagag-atcacgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttttctatatataaacaatttg-ttttcat 37187599  T
Q  338 tattttcatctca 350  Q
    ||| |||||||||    
T  37187600 tatcttcatctca 37187612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 2766007 - 2765973
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    |||||||||||||||||||||||||||||||||||    
T  2766007 ctatatatagacaatttgtttttcattattttcat 2765973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 9270792 - 9270699
Alignment:
Q  252 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    |||||||||||||| |||||||| ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  9270792 atcatgactcatttatttttcattagccaattaaaattgatcatgacatga-tttttttcctatatatagacaacttgcttttcattattttcat 9270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 50246580 - 50246546
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    |||||||||||||||||||||||||||||||||||    
T  50246580 ctatatatagacaatttgtttttcattattttcat 50246546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 2766153 - 2766088
Alignment:
Q  165 atattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 230  Q
    ||||||| |||| |||||||||||||||||||||| ||||||| || |||| ||| |||| |||||    
T  2766153 atattcttcatctcatttaatgttttcttatcatctaatcaaattgaattacgactcattcatttt 2766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 10027372 - 10027340
Alignment:
Q  99 atctttatctttatctttattatatatatttgc 131  Q
    |||||||||||||||||||||||||||||||||    
T  10027372 atctttatctttatctttattatatatatttgc 10027340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 42392259 - 42392291
Alignment:
Q  99 atctttatctttatctttattatatatatttgc 131  Q
    |||||||||||||||||||||||||||||||||    
T  42392259 atctttatctttatctttattatatatatttgc 42392291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 36144410 - 36144377
Alignment:
Q  99 atctttatctttatctttattatatatatttgcg 132  Q
    |||||||||||||||||||||||||| |||||||    
T  36144410 atctttatctttatctttattatatacatttgcg 36144377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 22505440 - 22505412
Alignment:
Q  103 ttatctttatctttattatatatatttgc 131  Q
    |||||||||||||||||||||||||||||    
T  22505440 ttatctttatctttattatatatatttgc 22505412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 105 - 348
Target Start/End: Complemental strand, 21992799 - 21992555
Alignment:
Q  105 atctttatctttattatatatatttgcgttannnnnnnnnaaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatc 204  Q
    |||||||||||||||||||||||||||| ||         |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21992799 atctttatctttattatatatatttgcgctatttttttttaaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaatc 21992700  T
Q  205 aaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatga-n 303  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      
T  21992699 aaaatggattatgacacatttattttatatcaaccaatcaaaagaggatcatgactcatttgtttttcttgagccaatcaaaatggatcatgatatgatt 21992600  T
Q  304 nnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
            |||||||||||||||||||||||||||||||||||||    
T  21992599 ttttttttctatatatagacaatttgtttttcattattttcatct 21992555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 33452444 - 33452320
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  33452444 catctcatttaatgttttcttatcatccaatcaaaatgaattatgaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 33452345  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||||    
T  33452344 atgagccaatcaaaatggatcatga 33452320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 13705617 - 13705495
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  13705617 catctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 13705520  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||||    
T  13705519 atgagccaatcaaaatggatcatga 13705495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 15654083 - 15654155
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 245  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654083 catctcatttaatactttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 15654155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 15664036 - 15664108
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 245  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15664036 catctcatttaatactttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 15664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 4857034 - 4856915
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatg 275  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| ||||| |  |||||||     
T  4857034 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttatagttttcatc 4856936  T
Q  276 agccaatcaaaatggatcatg 296  Q
    ||||||||||||| |||||||    
T  4856935 agccaatcaaaattgatcatg 4856915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 30890175 - 30890054
Alignment:
Q  178 catttaatgttttctt-atcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagag-gatcatgactcatttgtttttcatg 275  Q
    ||||||||||||| || |||||||||||||||| ||| ||||| ||| ||||||  | ||||||||||||| |  ||||||||||||||| |||| ||||    
T  30890175 catttaatgttttttttatcatccaatcaaaatagatcatgactcatatatttttcaacaaccaataaaaaaattgatcatgactcatttattttacatg 30890076  T
Q  276 agccaatcaaaatggatcatga 297  Q
    | ||||||||||| ||||||||    
T  30890075 atccaatcaaaattgatcatga 30890054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 346
Target Start/End: Original strand, 11550248 - 11550417
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatg 275  Q
    |||||||||||||||||||||||||| ||| |  |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| ||||| |  |||||||     
T  11550248 catttaatgttttcttatcatccaattaaattaaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttatagttttcatc 11550346  T
Q  276 agccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    ||||||||||||| |||||||   |||         |||||||| |||||||||||||||||| |||||||    
T  11550347 agccaatcaaaattgatcatgtcttgatttttttccctatatattgacaatttgtttttcattgttttcat 11550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 4749520 - 4749617
Alignment:
Q  251 gatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||| ||||          |||||||| ||||||||||||||||||| |||||||    
T  4749520 gatcatgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttctatatatataaacaatttgtttttcattatcttcatct 4749617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 346
Target Start/End: Original strand, 27434709 - 27434881
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  27434709 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaaga-tggaccatgactcatttagttttc 27434807  T
Q  273 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    |  | ||||||||||| ||| |    ||||         || ||||||||||||||||||||||||||||||||    
T  27434808 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcat 27434881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 15654187 - 15654233
Alignment:
Q  243 aaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatg 289  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||    
T  15654187 aaaaaaaggatcatgactcatttgtttttcatgttccaatcaaaatg 15654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 15664142 - 15664182
Alignment:
Q  249 aggatcatgactcatttgtttttcatgagccaatcaaaatg 289  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  15664142 aggatcatgactcatttgtttttcatgttccaatcaaaatg 15664182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 33452285 - 33452249
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcatct 348  Q
    |||||||||||||||||||||||||| ||||||||||    
T  33452285 ctatatatagacaatttgtttttcatcattttcatct 33452249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 130
Target Start/End: Original strand, 4749243 - 4749274
Alignment:
Q  99 atctttatctttatctttattatatatatttg 130  Q
    ||||||||||||||||||||||||||||||||    
T  4749243 atctttatctttatctttattatatatatttg 4749274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 32681527 - 32681561
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    ||||||||||||||||| |||||||||||||||||    
T  32681527 ctatatatagacaatttatttttcattattttcat 32681561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 27428653 - 27428682
Alignment:
Q  99 atctttatctttatctttattatatatatt 128  Q
    ||||||||||||||||||||||||||||||    
T  27428653 atctttatctttatctttattatatatatt 27428682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 1608101 - 1608073
Alignment:
Q  178 catttaatgttttcttatcatccaatcaa 206  Q
    |||||||||||||||||||||||||||||    
T  1608101 catttaatgttttcttatcatccaatcaa 1608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 13705459 - 13705427
Alignment:
Q  316 atatagacaatttgtttttcattattttcatct 348  Q
    |||||||||||||||||||||| ||||||||||    
T  13705459 atatagacaatttgtttttcatcattttcatct 13705427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 15888606 - 15888574
Alignment:
Q  99 atctttatctttatctttattatatatatttgc 131  Q
    |||| ||||||||||||||||||||||||||||    
T  15888606 atctctatctttatctttattatatatatttgc 15888574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 99 - 348
Target Start/End: Original strand, 9080 - 9330
Alignment:
Q  99 atctttatctttatctttattatatatatttgcgttannnnnnnnnaaagg-acacgtggcaagcttatattctccatcccatttaatgttttcttatca 197  Q
    |||||||||||||||||||||||||||||||| | ||         ||| | |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9080 atctttatctttatctttattatatatatttgtgctattttttttaaaaagtacacgtggtaagcttatattttccatcccatttaatgttttcttatca 9179  T
Q  198 tccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9180 tccaatcaaaatggattataacacatttattttatatcaaccaataaaaagaggatcatgactcatttatttttcatgagccaatcaaaatggatcatga 9279  T
Q  298 tatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    |||||         |||||||||||||||||||||||||||||||||||||    
T  9280 tatgatttttttttctatatatagacaatttgtttttcattattttcatct 9330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 162 - 348
Target Start/End: Original strand, 19095344 - 19095530
Alignment:
Q  162 cttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactc 261  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19095344 cttatattctccatcccatttaatgttttcttatcattcaataaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactc 19095443  T
Q  262 atttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    ||||||||||||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||||||||||||||    
T  19095444 atttgtttttcatgagccaatcaaaatggatcacgatatgatttttttttctatatatagacaatttgtttttcattattttcatct 19095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 8314088 - 8313968
Alignment:
Q  227 ttttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaat 326  Q
    |||| ||||||||||| |||| || |||||||||||||| ||||| || ||||||||||||| |||||||| ||||         ||||||||||||||     
T  8314088 ttttttatcaaccaatcaaaatag-atcatgactcatttattttttattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaa 8313990  T
Q  327 ttgtttttcattattttcatct 348  Q
    || |||||||||||||||||||    
T  8313989 ttatttttcattattttcatct 8313968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 45914958 - 45915138
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| |||||||||||||||||||||||||||||| || ||||||||  ||| ||||| | || | ||||| || |  | | ||||||||||||    
T  45914958 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgacttattcatttttttattagccaattaagat-gaaccatgactcattt 45915056  T
Q  266 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnc-tatatatagacaatttgtttttcattattttcat 346  Q
      ||||||| | |||||||||||||||||||   |||         | | ||||||||||||||||||||||||||||||||    
T  45915057 agttttcatcaaccaatcaaaatggatcatgccttgattttttttccctgtatatagacaatttgtttttcattattttcat 45915138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 346
Target Start/End: Original strand, 46514368 - 46514540
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||| | |||| |||||||||||  || | ||| |||||| ||| |||  |||||| ||||  | || |||| |||||| ||||||    
T  46514368 catctcatttaatgttttttcatcaaccaatcaaaatatatcacgactcatttactttttatttaccaatcaaaa-tgaatgatgattcatttatttttc 46514466  T
Q  273 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    || ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  46514467 attagccaattaaaattgatcatgacatgattttttcccctatatatagacaacttgcttttcattattttcat 46514540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 8106997 - 8106928
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 247  Q
    ||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||| | |||||||| ||||    
T  8106997 catttaatgtttctttatcatccaatcaaaattgattatgactcatctattttacaacaaccaatcaaaa 8106928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 8111643 - 8111574
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 247  Q
    ||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||| | |||||||| ||||    
T  8111643 catttaatgtttctttatcatccaatcaaaattgattatgactcatctattttacaacaaccaatcaaaa 8111574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 15535348 - 15535296
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 230  Q
    |||||||||||||||||||||||||||||| || |||||||| |||| |||||    
T  15535348 catttaatgttttcttatcatccaatcaaattgaattatgactcattcatttt 15535296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 346
Target Start/End: Complemental strand, 22544288 - 22544110
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | | ||||||||||||    
T  22544288 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaaccatgactcattt 22544190  T
Q  266 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
      ||||||| | ||||||||||| |||||||   |||         ||||||||| |||||||||||||||||||||||||    
T  22544189 agttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatataaacaatttgtttttcattattttcat 22544110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 3417383 - 3417429
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatg 296  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  3417383 ggatcatgactcatttatttttcatcagccaatcaaaattgatcatg 3417429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 41322437 - 41322471
Alignment:
Q  98 aatctttatctttatctttattatatatatttgcg 132  Q
    |||||||||||||||||||||||||||||||||||    
T  41322437 aatctttatctttatctttattatatatatttgcg 41322471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 8314098 - 8314029
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 247  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||    
T  8314098 catttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 8314029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 16995447 - 16995480
Alignment:
Q  99 atctttatctttatctttattatatatatttgcg 132  Q
    ||||||||||||||||||||||||||||||||||    
T  16995447 atctttatctttatctttattatatatatttgcg 16995480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 15535215 - 15535181
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    ||||||||| |||||||||||||||||||||||||    
T  15535215 ctatatataaacaatttgtttttcattattttcat 15535181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 40700108 - 40700137
Alignment:
Q  103 ttatctttatctttattatatatatttgcg 132  Q
    ||||||||||||||||||||||||||||||    
T  40700108 ttatctttatctttattatatatatttgcg 40700137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 11440957 - 11440993
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcatct 348  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  11440957 ctatatataaacagtttgtttttcattattttcatct 11440993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 52)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15606086 - 15605962
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  15606086 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgatcatgactcatttgtttttc 15605987  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||| ||||||||||||    
T  15605986 atgagccaatcataatggatcatga 15605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15614439 - 15614315
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  15614439 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgatcatgactcatttgtttttc 15614340  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||| ||||||||||||    
T  15614339 atgagccaatcataatggatcatga 15614315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15648255 - 15648131
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  15648255 catctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttc 15648156  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||||    
T  15648155 atgagccaatcaaaatggatcatga 15648131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 10894547 - 10894666
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||    
T  10894547 catttaatgttttcttatcatccaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaatgattataactcatttgtttttcatgag 10894646  T
Q  278 ccaatcaaaatggatcatga 297  Q
    ||||||||||||||||||||    
T  10894647 ccaatcaaaatggatcatga 10894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15624467 - 15624343
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  15624467 catctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttc 15624368  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    || ||||||||||||||||||||||    
T  15624367 atcagccaatcaaaatggatcatga 15624343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 15624279 - 15624165
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15624279 catttaatgttttcttatcatccaatcaaaatggattttgacacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatgag 15624180  T
Q  278 ccaatcaaaatggat 292  Q
    ||||| |||||||||    
T  15624179 ccaattaaaatggat 15624165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 15637610 - 15637492
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15637610 catctcatttaatgttttcctatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 15637511  T
Q  273 atgagccaatcaaaatgga 291  Q
    |||| ||||||| ||||||    
T  15637510 atgatccaatcataatgga 15637492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 15648067 - 15647953
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15648067 catttaatgttttcttatcatccaatcaaaatggattttggcacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatgag 15647968  T
Q  278 ccaatcaaaatggat 292  Q
    |||||||||||||||    
T  15647967 ccaatcaaaatggat 15647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15637426 - 15637302
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  15637426 catctcatttaatgttttcctatcatccaatgacaatggattttgacacatttattttatatcaaccaataaaaaatggatcatgactcatttgtttttc 15637327  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||| ||||||||||||    
T  15637326 atgagccaatcataatggatcatga 15637302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 15637794 - 15637676
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15637794 catctcatttaatgttttcttaacatccaatcagaatgaattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttgtttttc 15637695  T
Q  273 atgagccaatcaaaatgga 291  Q
    |||||||||||| ||||||    
T  15637694 atgagccaatcataatgga 15637676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 15613928 - 15613808
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaata-aaaagaggatcatgactcatttgttttt 271  Q
    |||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  15613928 catctcatttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaagcatcatgactcatttgttttt 15613829  T
Q  272 catgagccaatcaaaatggat 292  Q
    |||||||||||||||||||||    
T  15613828 catgagccaatcaaaatggat 15613808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15637243 - 15637119
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  15637243 catctcatttaatgttttcttatcattcaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgaccatgactcatttgtttttc 15637144  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||| ||| ||||||||    
T  15637143 atgagccaatcataatagatcatga 15637119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 16250411 - 16250529
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||| ||||||||| || |||||||||||    
T  16250411 catttaatgttttcttatcatccaatcaaaatagattatgacacatttgttttatatcaaccaatcaaaaaaggagcatgactca-ttatttttcatgag 16250509  T
Q  278 ccaatcaaaatggatcatga 297  Q
    ||||||||||||||||||||    
T  16250510 ccaatcaaaatggatcatga 16250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 15637060 - 15636942
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  15637060 catctcatttaat-ttttattatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttgttttta 15636962  T
Q  273 atgagccaatcaaaatggat 292  Q
    ||||| ||||||||||||||    
T  15636961 atgagtcaatcaaaatggat 15636942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 20540926 - 20540820
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  20540926 catttaacgtttttttatcctccaatcaaaatggattatgacacatttattttatatcaaccaataaaaaaagaatcataactcatttgtttttcatgag 20540827  T
Q  278 ccaatca 284  Q
    |||||||    
T  20540826 ccaatca 20540820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 181 - 292
Target Start/End: Complemental strand, 15605567 - 15605455
Alignment:
Q  181 ttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaata-aaaagaggatcatgactcatttgtttttcatgagcc 279  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||    
T  15605567 ttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaaacatcatgactcatttgtttttcatgagcc 15605468  T
Q  280 aatcaaaatggat 292  Q
    |||||||||||||    
T  15605467 aatcaaaatggat 15605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15614256 - 15614133
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||     
T  15614256 catctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aagatcatgacccatttgtttttt 15614158  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||||| ||| ||||||||    
T  15614157 atgagccaatcataatagatcatga 15614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 38050321 - 38050219
Alignment:
Q  145 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 244  Q
    |||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  38050321 aaagtacatgtggcaagcttatattctccatctcatttaatattttcttatcatccaatcaaaatggattatgacacatttattttatatcatccaatca 38050222  T
Q  245 aaa 247  Q
    |||    
T  38050221 aaa 38050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 15605721 - 15605628
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttg 266  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15605721 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttg 15605628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 15605903 - 15605780
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||     
T  15605903 catctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aagatcatgacccatttgtttttt 15605805  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
    |||||||||| | ||| ||||||||    
T  15605804 atgagccaattataatagatcatga 15605780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 15614073 - 15613981
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttg 266  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15614073 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aggatcatgactcatttg 15613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 15624597 - 15624526
Alignment:
Q  226 attttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  15624597 attttatatcaaccaataaaaaaaggatcatgactcatttgttttttatgagccaatcataatggatcatga 15624526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 302
Target Start/End: Original strand, 10895864 - 10895992
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||| |||||| |||||||| |||||| ||||| |||||||||| ||| |  |||| ||||  |||||||||||||||| ||||||    
T  10895864 catctcatttaatgtttttttatcaaccaatcaatatggatcatgactcatttattttttattagtcaatcaaaat-ggatcatgactcatttatttttc 10895962  T
Q  273 atgagccaatcaaaatggatcatgatatga 302  Q
    || ||||||||||||| |||||||| ||||    
T  10895963 attagccaatcaaaattgatcatgacatga 10895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 15613541 - 15613469
Alignment:
Q  224 ttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  15613541 ttattttatatcaaccaataaaaaaag-atcatgactcatttttttttcatgagccaatcaaaatggatcatga 15613469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 287343 - 287496
Alignment:
Q  194 atcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatc 293  Q
    |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||||||||||||||| ||||| || ||||||||||||| ||||    
T  287343 atcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggatcatgactcatttattttttattagccaatcaaaattgatc 287441  T
Q  294 atgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    |||| || |         |||||||||||||| ||||||||||||||||||||||    
T  287442 atgacataattttttttcctatatatagacaaattgtttttcattattttcatct 287496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 15605402 - 15605343
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 232  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15605402 catctcatttaatgttttcttatcatccaatcaaaatggattttgacacatttattttat 15605343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 15648385 - 15648314
Alignment:
Q  226 attttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  15648385 attttacatcaaccaataaaaaaaggaccatgactcatttgttttttatgagccaatcataatggatcatga 15648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 15923684 - 15923611
Alignment:
Q  224 ttattttatatcaaccaataaaaagaggatcatgactcatttgttttt-catgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  15923684 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttttcatgagccaatcaaaatggatcatga 15923611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 15605188 - 15605117
Alignment:
Q  224 ttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||    
T  15605188 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttt-atgagccaatcaaaatggatcatga 15605117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 25113514 - 25113397
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagag-gatcatgactcatttgtttttcatga 276  Q
    ||||||||||||| |||||||||||| ||||| ||||||||| || |||| | || | ||||||| |||| |  ||||||||||||||| |||||||| |    
T  25113514 catttaatgtttttttatcatccaattaaaatagattatgactcacttatat-attttaaccaatcaaaaaatagatcatgactcatttatttttcatta 25113416  T
Q  277 gccaatcaaaatggatcat 295  Q
    ||||||||||||| |||||    
T  25113415 gccaatcaaaatgaatcat 25113397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 15613755 - 15613696
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 232  Q
    |||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  15613755 catctcatttaatgttttcttatcatacaatcaaaacggattttgacacatttattttat 15613696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 17895138 - 17895021
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| |||   |||| | | | ||||| ||||||| |||||||||||||| ||||| |||||    
T  17895138 catttaatgtttt-ttatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagag-atcatgactcatttattttttatgag 17895041  T
Q  278 ccaatcaaaatggatcatga 297  Q
    ||||||||||| ||||||||    
T  17895040 ccaatcaaaattgatcatga 17895021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 4930230 - 4930272
Alignment:
Q  255 atgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4930230 atgactcatttgtttttcatgagccaatcaaaatggatcatga 4930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 18666790 - 18666969
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| ||||||||| ||| |||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | | ||||||||||||    
T  18666790 attcttcatctcatttaatgcttttttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaaccatgactcattt 18666888  T
Q  266 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
      ||||||| | |||||||||||||||||||   |||         |||||||||| ||||||||||||||||||||||||    
T  18666889 agttttcatcaaccaatcaaaatggatcatgccttgatttttttccctatatataggcaatttgtttttcattattttcat 18666969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 23136464 - 23136533
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 247  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||| ||||    
T  23136464 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa 23136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 15923991 - 15923951
Alignment:
Q  252 atcatgactcatttgtttttcatgagccaatcaaaatggat 292  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15923991 atcatgactcatttgtttttcatgagccaatcaaaatggat 15923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 348
Target Start/End: Complemental strand, 27521272 - 27521102
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcatttgtttttcatga 276  Q
    ||||||||| |||  ||||| ||||| |||||||||  ||   |||||||||| | |||| ||||| ||||  ||||||||||| |||| ||||||||||    
T  27521272 catttaatgcttttctatcaaccaattaaaatggatcctgcatcatttatttttttatcagccaatcaaaat-ggatcatgactaatttctttttcatga 27521174  T
Q  277 gccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    |||||||||||| || ||||  ||||         ||||| ||||| |||||||||||||||||||||||||    
T  27521173 gccaatcaaaattgaccatgtcatgattttttttcctatacatagataatttgtttttcattattttcatct 27521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 15923898 - 15923839
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 232  Q
    |||| |||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  15923898 catctcatttaatattttcttatcatccaatcaaaacagattttgacacatttattttat 15923839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 343
Target Start/End: Original strand, 8362304 - 8362480
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| |||||||||||||||||||||||||||||| || |||||||| | || | |||| ||| | ||||| || |  | | ||||||||||||    
T  8362304 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactctttcatttttttattagccaatcaaga-tgaaccatgactcattt 8362402  T
Q  266 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattatttt 343  Q
      ||||||| | ||||||||||| |||||||   |||          |||||||||||||||||||||||||||||||    
T  8362403 agttttcatcaaccaatcaaaattgatcatgccttgatttttttccttatatatagacaatttgtttttcattatttt 8362480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 12167224 - 12167179
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 295  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  12167224 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 12167179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 12411652 - 12411607
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 295  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  12411652 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 12411607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 35136706 - 35136758
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 230  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||| ||||    
T  35136706 catttaatgttttcttatcatccaatcaaattgaattatgactcatttgtttt 35136758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 772688 - 772597
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgtt 268  Q
    ||||||||||||  ||||||| ||||||||||| |||||||| ||| ||||||  | |||||||| |||||   ||||||||||||||||||    
T  772688 catttaatgtttctttatcattcaatcaaaatgaattatgactcatctatttttcaacaaccaatcaaaaaatagatcatgactcatttgtt 772597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 15636889 - 15636830
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 232  Q
    |||| |||||||||| || ||||||||||||||||| |||||  ||||||||||||||||    
T  15636889 catctcatttaatgtatttttatcatccaatcaaaacggatttggacacatttattttat 15636830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 19190675 - 19190710
Alignment:
Q  97 taatctttatctttatctttattatatatatttgcg 132  Q
    ||||||||||||||||||||||||||||||||||||    
T  19190675 taatctttatctttatctttattatatatatttgcg 19190710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 23689282 - 23689219
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 230  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| |||||    
T  23689282 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttt 23689219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 346
Target Start/End: Complemental strand, 45251121 - 45250949
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttgttttt 271  Q
    |||| ||||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | || || || |  | | ||||||||||||  ||||    
T  45251121 catctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccgatcaaga-tgaaccatgactcatttagtttt 45251023  T
Q  272 catgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    ||| | ||||||||||| |||||||   |||         |||||||||||||||||||||||||||||||||||    
T  45251022 catcaaccaatcaaaattgatcatgccttga-tttttttcctatatatagacaatttgtttttcattattttcat 45250949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 16291992 - 16292037
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 295  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  16291992 ggatcatgactcatttatttttcatgagtcaatcaaaattgatcat 16292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 4930305 - 4930340
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcatc 347  Q
    |||||||||||||||||||||||||| |||||||||    
T  4930305 ctatatatagacaatttgtttttcatcattttcatc 4930340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 23689138 - 23689104
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    ||||||||| |||||||||||||||||||||||||    
T  23689138 ctatatataaacaatttgtttttcattattttcat 23689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 23161172 - 23161056
Alignment:
Q  179 atttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagc 278  Q
    |||||||||||||||| ||| |||||||| || || ||||| ||||| |||| ||| |  |||| ||||  | |||||||| |||||  |||||||  ||    
T  23161172 atttaatgttttcttaacatacaatcaaattgaatcatgactcatttcttttttattagtcaatcaaaa-tgaatcatgacacatttagttttcataggc 23161074  T
Q  279 caatcaaaatggatcatg 296  Q
    |||||||||| |||||||    
T  23161073 caatcaaaattgatcatg 23161056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 25063975 - 25064004
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaa 207  Q
    ||||||||||||||||||||||||||||||    
T  25063975 catttaatgttttcttatcatccaatcaaa 25064004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 34410 - 34291
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  34410 catttaatgctttcatatcatctaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttcatgag 34311  T
Q  278 ccaatcaaaatggatcatga 297  Q
    ||||||||||||||| ||||    
T  34310 ccaatcaaaatggattatga 34291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 37069805 - 37069683
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  37069805 catctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 37069708  T
Q  273 atgagccaatcaaaatggatcatga 297  Q
     ||||||||||||||||||||||||    
T  37069707 gtgagccaatcaaaatggatcatga 37069683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 17462041 - 17461926
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||| ||| ||||     
T  17462041 catttagtgtttttttatcaaccaatcaaaatggattatgatacatttattttatatcaaccaat-aaaagaagattatgactcatttgtgttttatgaa 17461943  T
Q  278 ccaatcaaaatggatca 294  Q
    |||||||||||||||||    
T  17461942 ccaatcaaaatggatca 17461926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 178 - 348
Target Start/End: Complemental strand, 24193 - 24024
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||| ||| | |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||| ||||||||||| |||||||| ||    
T  24193 catttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggataatgactcatttatttttcattag 24095  T
Q  278 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    ||||||||||| |||||||| ||||         |||||||||||||| ||||||||||||||||||||||    
T  24094 ccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattgtttttcattattttcatct 24024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 348
Target Start/End: Complemental strand, 13914798 - 13914684
Alignment:
Q  233 atcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgttt 332  Q
    |||||||||| |||| || |||||||||||||| ||||| || ||||||||||||| |||||| | ||||         |||||||||||||| ||||||    
T  13914798 atcaaccaatcaaaatag-atcatgactcatttattttttattagccaatcaaaattgatcattacatgattttttttcctatatatagacaaattgttt 13914700  T
Q  333 ttcattattttcatct 348  Q
    ||||||||||||||||    
T  13914699 ttcattattttcatct 13914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 13923330 - 13923288
Alignment:
Q  255 atgactcatttgtttttcatgagccaatcaaaatggatcatga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13923330 atgactcatttgtttttcatgagccaatcaaaatggatcatga 13923288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 346
Target Start/End: Complemental strand, 18066848 - 18066676
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  18066848 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaaga-tggaccatgactcatttagttttc 18066750  T
Q  273 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    |  | ||||||||||| ||| |    ||||         || ||||||||||||||||||||||||||||||||    
T  18066749 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcat 18066676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 346
Target Start/End: Original strand, 35647971 - 35648138
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    |||||||| ||||||||||||||||||||| || ||||||||  ||||||||| ||| | ||||| ||||  |  |||| || |||||  ||||||  ||    
T  35647971 catttaatattttcttatcatccaatcaaattgaattatgacttatttattttttattagccaatcaaaa-tgattcataacacatttagttttcactag 35648069  T
Q  278 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    ||||||||||| | |||||  ||||         |||||||| ||||||||||||||||||||||||||    
T  35648070 ccaatcaaaattgttcatgtcatgattttttttcctatatattgacaatttgtttttcattattttcat 35648138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 14288190 - 14288140
Alignment:
Q  252 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatga 302  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  14288190 atcatgactcatttatttttcattagccaatcaaaattgatcatgacatga 14288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 37069651 - 37069615
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcatct 348  Q
    |||||||||||||||||||||||||| ||||||||||    
T  37069651 ctatatatagacaatttgtttttcatcattttcatct 37069615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 13923253 - 13923218
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcatc 347  Q
    |||||||||||||||||||||||||| |||||||||    
T  13923253 ctatatatagacaatttgtttttcatcattttcatc 13923218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 130
Target Start/End: Complemental strand, 55058011 - 55057980
Alignment:
Q  99 atctttatctttatctttattatatatatttg 130  Q
    ||||||||||||||||||||||||||||||||    
T  55058011 atctttatctttatctttattatatatatttg 55057980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 10780389 - 10780423
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    |||||||||| ||||||||||||||||||||||||    
T  10780389 ctatatataggcaatttgtttttcattattttcat 10780423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 10973998 - 10974032
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    |||||||||| ||||||||||||||||||||||||    
T  10973998 ctatatataggcaatttgtttttcattattttcat 10974032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 13924648 - 13924614
Alignment:
Q  97 taatctttatctttatctttattatatatatttgc 131  Q
    |||||| ||||||||||||||||||||||||||||    
T  13924648 taatctctatctttatctttattatatatatttgc 13924614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 17990085 - 17990114
Alignment:
Q  99 atctttatctttatctttattatatatatt 128  Q
    ||||||||||||||||||||||||||||||    
T  17990085 atctttatctttatctttattatatatatt 17990114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 18072904 - 18072875
Alignment:
Q  99 atctttatctttatctttattatatatatt 128  Q
    ||||||||||||||||||||||||||||||    
T  18072904 atctttatctttatctttattatatatatt 18072875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 501100 - 501220
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgtttttcatga 276  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||    
T  501100 catttaatactttcttatcatccaatcaaaattgattatgacacatttattttatatcaatcgataaaaaaaaggatcatgactcatttgtttttcatga 501199  T
Q  277 gccaatcaaaatggatcatga 297  Q
    |||||||||||| ||||||||    
T  501200 gccaatcaaaatagatcatga 501220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 36647960 - 36648079
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||  |||| || | |||||||||||| |||||     
T  36647960 catttaatgttttcttatcttctaatcaaaatagattatgtcacgtttattttatatcaaccaataaaagaaggaccacggctcatttgttttacatgaa 36648059  T
Q  278 ccaatcaaaatggatcatga 297  Q
    ||||||||||||||||||||    
T  36648060 ccaatcaaaatggatcatga 36648079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 27588612 - 27588791
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| |||||||| ||||||||||||||||||||| || |||||||| |||||| |||| ||| | ||||| || |  | | ||||||||||||    
T  27588612 attcttcatctcatttaatattttcttatcatccaatcaaattgaattatgactcatttatttttttattagccaatcaaga-tgaaccatgactcattt 27588710  T
Q  266 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
      ||||||| | ||||||||||| |||||||   |||         | |||||||||||||||||||||||||||||||||    
T  27588711 agttttcatcaaccaatcaaaattgatcatgccttgattttttttccaatatatagacaatttgtttttcattattttcat 27588791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 9663135 - 9663066
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 247  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||| ||||    
T  9663135 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa 9663066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 19205946 - 19205849
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||   ||||         ||||||||||| |||||||||||||||||||||||||    
T  19205946 ggatcatgactcatctatttttcatgagccaatcaaaattgatcatatcatga-tttttttcctatatatagataatttgtttttcattattttcatct 19205849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 29857767 - 29857812
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 295  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  29857767 ggatcatgactcatttatttttcatgagtcaatcaaaattgatcat 29857812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 501252 - 501288
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcatct 348  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  501252 ctatataaagacaatttgtttttcatcattttcatct 501288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 9359 - 9444
Alignment:
Q  15 cagtttataccttgcaaatctaaatttgactgtgagtacctttaggaccggtttggagatgtaataaagggattgatatgtgtaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||    
T  9359 cagtttataccttgcaaatctaaatttgactgtgagtacctttatgaccggtttggagatgtaataaagtgattgacatgtgtaat 9444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 11127769 - 11127864
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgt 267  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  11127769 catctcatttaatattttattatcaaccaatcaaaatggattatgacacatttattttatatcaaccaataaaaaaaaagatcatgactcatttgt 11127864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 348
Target Start/End: Original strand, 45049526 - 45049668
Alignment:
Q  205 aaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgann 304  Q
    ||||| ||| ||||| |||||| ||| ||| | ||||| ||||  |||||||||||||||| |||||||| ||||||||||||| |||||||| ||||      
T  45049526 aaaatagatcatgactcatttaatttttattagccaatcaaaat-ggatcatgactcatttatttttcattagccaatcaaaattgatcatgacatgatt 45049624  T
Q  305 nnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
           |||||||||||||| ||||||||||||||||||||||    
T  45049625 ttttttcctatatatagacaaattgtttttcattattttcatct 45049668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 21119845 - 21120024
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttta-tatcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| |||||| ||| | ||||| || |  | | ||||||||||||    
T  21119845 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttattattagccaatcaaga-tgaaccatgactcattt 21119943  T
Q  266 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
      |||| || | ||||| ||||| ||||||| | |||         |||||||||||||||||||||||||||||||||||    
T  21119944 agtttttatcaaccaattaaaattgatcatgctttgattttttttcctatatatagacaatttgtttttcattattttcat 21120024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 20103500 - 20103562
Alignment:
Q  168 ttctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 230  Q
    |||| |||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  20103500 ttctacatctcatttaatgttttcttatcatccaatcaaattgaattatgactcatttatttt 20103562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 5243304 - 5243259
Alignment:
Q  250 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 295  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  5243304 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 5243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 5244858 - 5244826
Alignment:
Q  99 atctttatctttatctttattatatatatttgc 131  Q
    |||||||||||||||||||||||||||||||||    
T  5244858 atctttatctttatctttattatatatatttgc 5244826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 24972172 - 24972140
Alignment:
Q  314 atatatagacaatttgtttttcattattttcat 346  Q
    |||||||||||||||||||||||||||||||||    
T  24972172 atatatagacaatttgtttttcattattttcat 24972140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 24972324 - 24972272
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgac 219  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || ||||||||    
T  24972324 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgac 24972272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 41747366 - 41747418
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 230  Q
    ||||||||||||| |||||||||||||||| || ||||||||  |||||||||    
T  41747366 catttaatgttttattatcatccaatcaaattgaattatgacttatttatttt 41747418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 20103644 - 20103678
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    ||||||||||||| |||||||||||||||||||||    
T  20103644 ctatatatagacactttgtttttcattattttcat 20103678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 31300006 - 31300044
Alignment:
Q  205 aaaatggattatgacacatttattttatatcaaccaata 243  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  31300006 aaaaaggattatgaaacatttattttatatcaaccaata 31300044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 14876065 - 14876037
Alignment:
Q  104 tatctttatctttattatatatatttgcg 132  Q
    |||||||||||||||||||||||||||||    
T  14876065 tatctttatctttattatatatatttgcg 14876037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 12025064 - 12024979
Alignment:
Q  15 cagtttataccttgcaaatctaaatttgactgtgagtacctttaggaccggtttggagatgtaataaagggattgatatgtgtaat 100  Q
    ||||||||||||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12025064 cagtttataccttgcgaatcaaaatttgactgttggtacctttaggaccggtttggacatgtaataaagtgattgatatgtgtaat 12024979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 346
Target Start/End: Complemental strand, 7946613 - 7946432
Alignment:
Q  165 atattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcat 263  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |  |||||||| |||| | |||| ||| | ||||| || |  | | ||||||||||    
T  7946613 atattcttcatctcatttaatgttttcttatcatccaatcaaattaaattatgactcattcatttttttattagccaatcaaga-tgaaccatgactcat 7946515  T
Q  264 ttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    ||  ||||||| | ||||||||||||||||||| | |||         |||||||||||||||||||||||||||||||||||    
T  7946514 ttagttttcatcaaccaatcaaaatggatcatgttttgatttttttccctatatatagacaatttgtttttcattattttcat 7946432  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 29493987 - 29494104
Alignment:
Q  179 atttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    |||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | ||||||||||||||  ||||||| |     
T  29493987 atttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaatcatgactcatttagttttcatcaa 29494085  T
Q  278 ccaatcaaaatggatcatg 296  Q
    ||||||||||| |||||||    
T  29494086 ccaatcaaaattgatcatg 29494104  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 29494118 - 29494152
Alignment:
Q  312 ctatatatagacaatttgtttttcattattttcat 346  Q
    |||||||||||||||||||||||||||||||||||    
T  29494118 ctatatatagacaatttgtttttcattattttcat 29494152  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 30878825 - 30878866
Alignment:
Q  254 catgactcatttgtttttcatgagccaatcaaaatggatcat 295  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||    
T  30878825 catgactcaattgtttttcatgatccaatcaaaatagatcat 30878866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 48553313 - 48553341
Alignment:
Q  104 tatctttatctttattatatatatttgcg 132  Q
    |||||||||||||||||||||||||||||    
T  48553313 tatctttatctttattatatatatttgcg 48553341  T

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Target: scaffold0018 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 348
Target Start/End: Complemental strand, 67354 - 67189
Alignment:
Q  182 taatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaa 281  Q
    ||||||||| |||||| ||||| ||||||||| ||||| |||||||||| ||| | | ||| ||||  ||||||| |||||||| |||||||| ||||||    
T  67354 taatgtttttttatcaaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaat-ggatcataactcatttatttttcattagccaa 67256  T
Q  282 tcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    |||||||  ||||||| |||          ||||||||| |||||||||||||||||||||||||||    
T  67255 tcaaaatttatcatgaaatggttttttttcctatatatacacaatttgtttttcattattttcatct 67189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 348
Target Start/End: Original strand, 101102 - 101272
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||| ||| | |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||||||||||||||| |||||||| ||    
T  101102 catttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggatcatgactcatttatttttcataag 101200  T
Q  278 ccaatcaaaatggatcatgatatga-nnnnnnnnnctatatatagacaatttgtttttcattattttcatct 348  Q
    ||||||||||| || ||| | ||||          |||||||||||||| ||||||| ||||||||||||||    
T  101201 ccaatcaaaattgagcattacatgattttttttttctatatatagacaaattgttttacattattttcatct 101272  T

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Target: scaffold0155 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 26657 - 26786
Alignment:
Q  167 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttat-tttatatcaaccaataaaaagaggatcatgactcattt 265  Q
    ||||| |||| |||||||||||||||||||||||||||||| || |||||||| |||| || ||| ||| ||||||| || |  | | ||||||||||||    
T  26657 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactcattcatatttttattaaccaatcaaga-tgaaccatgactcattt 26755  T
Q  266 gtttttcatgagccaatcaaaatggatcatg 296  Q
      ||||||| | |||||||||||||||||||    
T  26756 agttttcatcaaccaatcaaaatggatcatg 26786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 26805 - 26836
Alignment:
Q  315 tatatagacaatttgtttttcattattttcat 346  Q
    ||||||||||||||||||||||||||||||||    
T  26805 tatatagacaatttgtttttcattattttcat 26836  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 346
Target Start/End: Complemental strand, 52654 - 52482
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  52654 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaaga-tggaccatgactcatttagttttc 52556  T
Q  273 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    |  | ||||||||||| ||| |    ||||         || ||||||||||||||||||||||||||||||||    
T  52555 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcat 52482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 58710 - 58681
Alignment:
Q  99 atctttatctttatctttattatatatatt 128  Q
    ||||||||||||||||||||||||||||||    
T  58710 atctttatctttatctttattatatatatt 58681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 346
Target Start/End: Complemental strand, 22239 - 22068
Alignment:
Q  173 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 272  Q
    |||| ||||||||| ||| | |||| |||||||||||  || ||||| |||||||||| |||    |||| |||| |  |||||||||||||| ||||||    
T  22239 catctcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaaataa-atcatgactcatttatttttc 22141  T
Q  273 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 346  Q
    || ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  22140 attagccaattaaaattgatcatgacatga-ttttttccctatatatagacaacttgcttttcattattttcat 22068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 67302 - 67185
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||| ||| |||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  | ||||| |||||  ||||||  ||    
T  67302 catttaatgttttcttaccattcaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgatttatgacacatttagttttcaccag 67204  T
Q  278 ccaatcaaaatggatcatg 296  Q
    ||||||||||| |||||||    
T  67203 ccaatcaaaattgatcatg 67185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 75407 - 75290
Alignment:
Q  178 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 277  Q
    ||||||||||||||||| ||| |||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  | ||||| |||||  ||||||  ||    
T  75407 catttaatgttttcttaccattcaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgatttatgacacatttagttttcaccag 75309  T
Q  278 ccaatcaaaatggatcatg 296  Q
    ||||||||||| |||||||    
T  75308 ccaatcaaaattgatcatg 75290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 17139 - 17020
Alignment:
Q  179 atttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagc 278  Q
    |||||||||||| | |||| ||||||||||| |||  |||| |||||||||| ||| ||||||| |||| | |||||||||| |||| | ||| || ||     
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaata-gatcatgacttatttatattttattag- 17044  T
Q  279 caatcaaaatggatcatgatatga 302  Q
    |||||||||| |||||||| ||||    
T  17043 caatcaaaattgatcatgacatga 17020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 30978 - 31009
Alignment:
Q  101 ctttatctttatctttattatatatatttgcg 132  Q
    ||||||||||||||||||||||||||||||||    
T  30978 ctttatctttatctttattatatatatttgcg 31009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 132
Target Start/End: Complemental strand, 167814 - 167783
Alignment:
Q  101 ctttatctttatctttattatatatatttgcg 132  Q
    ||||||||||||||||||||||||||||||||    
T  167814 ctttatctttatctttattatatatatttgcg 167783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 3147 - 3119
Alignment:
Q  103 ttatctttatctttattatatatatttgc 131  Q
    |||||||||||||||||||||||||||||    
T  3147 ttatctttatctttattatatatatttgc 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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