View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_high_8 (Length: 316)
Name: NF3038_high_8
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 1248691 - 1248988
Alignment:
| Q |
17 |
ctctctttctccaccgccacgccgacaccactgccaccccgacgatgaaaaagtcctcctcaaaatcaaagaccatttccacaatacaagcctcttctca |
116 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248691 |
ctctctttctccaccaccacgccgacaccactgccaccccgacgacgaaaaagtcctcctcaaaatcaaagaccatttccacaatacaagcctcttctca |
1248790 |
T |
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| Q |
117 |
acctggactccaaaaacagattgttgcaaatggcgcatagtcttatgcaagaaaatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1248791 |
acctggactccaaaaacagattgttgcaaatggcgcatagtcttatgcaagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacg |
1248890 |
T |
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| Q |
217 |
gtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgcaacctcactaacctcacaggtcct |
314 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
1248891 |
gtgctgatgacctcgtcggtacgatccccccactcattgctgacctaccatacctggagaccctcatattccgcaacctccctaacctcaccggtcct |
1248988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 12079935 - 12079638
Alignment:
| Q |
17 |
ctctctttctccaccgccacgccgacaccactgccaccccgacgatgaaaaagtcctcctcaaaatcaaagaccatttccacaatacaagcctcttctca |
116 |
Q |
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||||||||||||||| ||||||| || || ||||||||| ||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
12079935 |
ctctctttctccaccaccacgcccacgcctctgccacccagacgacgaaaaagtcctcctcaagatcaaagattacttccacaatacaagcctcttctca |
12079836 |
T |
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| Q |
117 |
acctggactccaaaaacagattgttgcaaatggcgcatagtcttatgcaagaaaatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacg |
216 |
Q |
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| T |
12079835 |
acctggatcccacacacagactgttgcaaatggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatg |
12079736 |
T |
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| Q |
217 |
gtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgcaacctcactaacctcacaggtcct |
314 |
Q |
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|||||||||| || |||||||| ||||| |||||||| || || ||||| ||||| ||||||||||| || ||| ||| ||||||| ||||||||| |
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| T |
12079735 |
gtgctgatgatcttgtcggtacaataccgccactcatcgccgatctaccttacctcgagaccctcattttacgcctcctacctaacctaacaggtcct |
12079638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 12096570 - 12096278
Alignment:
| Q |
22 |
tttctccaccgccacgccgacaccactgccaccccgacgatgaaaaagtcctcctcaaaatcaaagaccatttccacaatacaagcctcttctcaacctg |
121 |
Q |
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||||| |||| ||||||| | ||| ||||||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |
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| T |
12096570 |
tttcttcaccaccacgcccaaacctctgccacccagacgacgaaaaagtcctcctcaagatcaaagattacttccacaatacaagcctcttctcaacctg |
12096471 |
T |
|
| Q |
122 |
gactccaaaaacagattgttgcaaatggcgcatagtcttatgcaagaaaatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgct |
221 |
Q |
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|| ||| | ||||| |||||||||||||| ||||||| ||||||||||||||||||||| || ||| | |||||||||||||| ||||| || || ||| |
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| T |
12096470 |
gatcccacacacagactgttgcaaatggcgtatagtctcatgcaagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgct |
12096371 |
T |
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| Q |
222 |
gatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgcaacctcactaacctcacaggtcct |
314 |
Q |
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||||| || |||||||| || || |||||||| || || ||||| ||||| ||||||||||| || ||| |||| ||||||| ||||||||| |
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| T |
12096370 |
gatgatcttgtcggtacaatcccgccactcatcgccgatctaccttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcct |
12096278 |
T |
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