View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_high_9 (Length: 303)
Name: NF3038_high_9
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 12447812 - 12448094
Alignment:
| Q |
16 |
tgaattgcaaggatatctgagacttccaaccatttgcttgcaaagagtgatgttcacatctttaccttcaccaccattaatcaaattgaattagtctccg |
115 |
Q |
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| T |
12447812 |
tgaattgcaaggatatctgagacttccaaccatttgcttgcaaagagtgatgttcacatctttaccttcaccaccattaatcaaattgaattagtctccg |
12447911 |
T |
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| Q |
116 |
taggtgtacttgttggattgcagttcaacatattgaatcttttcgatatgtcattgatgtatttcttttggtgagttaccacacctctactggtgttagt |
215 |
Q |
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| T |
12447912 |
taggtgtacttgttggattgcagttcaacatattgaatctttttgatatgtcattgatgtatttcttttggtgagttaccacacctctactggtgttagt |
12448011 |
T |
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| Q |
216 |
gaattctaaaccaaggaaatatttcaatcctcctaaattagtcatatcatatcaaattcagagcttaaccgacctttgcttct |
298 |
Q |
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| T |
12448012 |
gaattctaaaccaaggaaatatttcaatcctcctaaattagtcatatcatatcaaattcagagcttaactgacctttgtttct |
12448094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 36073118 - 36073365
Alignment:
| Q |
16 |
tgaattgcaaggatatctgagacttccaaccatttgcttgcaaagagtgatgttcacatctttaccttcaccaccattaatcaaattgaatt-agtctcc |
114 |
Q |
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| T |
36073118 |
tgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgttcttcacatccttaccttcatcatcattgctcagattttatttagtttct |
36073217 |
T |
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| Q |
115 |
gtaggtgtacttgttggattgcagttcaacatattgaatcttttcgatatgtcattgatgtatttcttttggtgagttaccacacctctactggtgttag |
214 |
Q |
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| T |
36073218 |
ataggtgtgcttgatcaattgcaat-caacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacac-tatgttggtattgg |
36073315 |
T |
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| Q |
215 |
tgaattctaaaccaaggaaatatttcaatcctcctaaattagtcatatca |
264 |
Q |
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| T |
36073316 |
tgaattctaaaccaaggaaatatctcaattttcataatttagtcatatca |
36073365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 12696548 - 12696604
Alignment:
| Q |
16 |
tgaattgcaaggatatctgagacttccaaccatttgcttgcaaagagtgatgttcac |
72 |
Q |
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| T |
12696548 |
tgaatttcaagcatatatgagacttccaaccatttgtttgtaaagagtgttgttcac |
12696604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 12696605 - 12696672
Alignment:
| Q |
101 |
ttgaattagtctccgtaggtgtacttgttggattgcagttcaacatattgaatcttttcgatatgtca |
168 |
Q |
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| T |
12696605 |
ttgaattagtcttcataggcgtgcctgttcgattgcagttcaacacattgaatcgtttcaatatgtca |
12696672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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