View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3038_low_1 (Length: 523)
Name: NF3038_low_1
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Complemental strand, 34568275 - 34567781
Alignment:
| Q |
20 |
aaaacccttatcatgaaataactaacccttctggagttatacaaatgggcttggcagaaaatcaagtaagtgtataaatatcgaagacgttttcggtgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568275 |
aaaacccttatcatgaaataactaacccttctggagttatacaaatgggcttggcagaaaatcaagtaagtgtataaatatcgaagacgttttcggtgtc |
34568176 |
T |
|
| Q |
120 |
tcacctgtgtcaatgatataagcnnnnnnnn-gcacgtgtatctgatcgaaattttgatcagatatatatgtacnnnnnnngcttatacatgcaagaaaa |
218 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
34568175 |
tgacctgtgtcaatgatataagaaaaaaaaaagcacgtgtatctcatcaaaattttgatcagatatat--gtactttttttgcttatacatgcaagaaaa |
34568078 |
T |
|
| Q |
219 |
gaaaggaaaaaattgtgacacttaattattttcattaatttctaagcttatattttactagttgactaatattttttgtttgaaattctttaggtatcat |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568077 |
gaaaggaaaaaaatgtgacacttaattattttcattaatttcgaagcttatattttactagttgactaatattttttgtttgaaattctttaggtatcat |
34567978 |
T |
|
| Q |
319 |
ttgatttacttgaaaaatacttggaagaacactcagaggcttcaacatggggaaaaggtggttcaagttttagagataatgcattatttcaagactatca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567977 |
ttgatttacttgaaaaatacttggaagaacactcagaggcttcaacatggggaaaaggtggttcaagttttagagataatgcattatttcaagactatca |
34567878 |
T |
|
| Q |
419 |
tggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaaatttgattatgaaagaattgtcctctctgct |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
34567877 |
tggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaaatttgattatgaaagaatcgtcctcactgct |
34567781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 385 - 502
Target Start/End: Complemental strand, 42790326 - 42790209
Alignment:
| Q |
385 |
gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaa |
484 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||| | |
|
|
| T |
42790326 |
gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagaggtggtaaagctac |
42790227 |
T |
|
| Q |
485 |
atttgattatgaaagaat |
502 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
42790226 |
atttgattcggaaagaat |
42790209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 385 - 502
Target Start/End: Complemental strand, 42799866 - 42799749
Alignment:
| Q |
385 |
gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaa |
484 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||| | |
|
|
| T |
42799866 |
gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagaggtggtaaagctac |
42799767 |
T |
|
| Q |
485 |
atttgattatgaaagaat |
502 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
42799766 |
atttgattcggaaagaat |
42799749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 42790542 - 42790475
Alignment:
| Q |
20 |
aaaacccttatcatgaaataactaacccttctggagttatacaaatgggcttggcagaaaatcaagta |
87 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
42790542 |
aaaacccttatcatgaattaactaactcttctggtgttatacaaatgggattggcagaaaatcaagta |
42790475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 42800082 - 42800015
Alignment:
| Q |
20 |
aaaacccttatcatgaaataactaacccttctggagttatacaaatgggcttggcagaaaatcaagta |
87 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
42800082 |
aaaacccttatcatgaattaactaactcttctggtgttatacaaatgggattggcagaaaatcaagta |
42800015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University