View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_low_10 (Length: 346)
Name: NF3038_low_10
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_10 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 46933071 - 46933406
Alignment:
| Q |
1 |
caaattataacaatggactttccaaactctatgttcctcattgtcttaacatgtgtcaccatcattgtttttcttcgttcattctttgctaggatcacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46933071 |
caaattataacaatggactttccaaactctatgttcctcattgtcttaacatgtgtcaccatcattgtttttcttcgttcattctttgcaaggatcacaa |
46933170 |
T |
|
| Q |
101 |
aaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933171 |
aaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttac |
46933270 |
T |
|
| Q |
201 |
aaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933271 |
aaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgac |
46933370 |
T |
|
| Q |
301 |
cagttcttgtctaatagaaccattccacaatctgtg |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
46933371 |
cagttcttgtctaatagaaccattccacaatctgtg |
46933406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 100 - 336
Target Start/End: Original strand, 46926305 - 46926541
Alignment:
| Q |
100 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatctta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
46926305 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctag |
46926404 |
T |
|
| Q |
200 |
caaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatga |
299 |
Q |
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| || |||||||| || |||| |||||||||||||||| |||||||||| | || |||||||||| | ||||| || ||||| || || |||||||| |
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| T |
46926405 |
cgaaaattcatggccctttaatgagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatga |
46926504 |
T |
|
| Q |
300 |
ccagttcttgtctaatagaaccattccacaatctgtg |
336 |
Q |
| |
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| |||||||||| || |||| ||| || ||| ||||| |
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| T |
46926505 |
caagttcttgtcaaagagaaacatacctcaaactgtg |
46926541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 336
Target Start/End: Complemental strand, 11107756 - 11107517
Alignment:
| Q |
97 |
acaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatc |
196 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || | |
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| T |
11107756 |
acaaaaccaacctataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaac |
11107657 |
T |
|
| Q |
197 |
ttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaa |
296 |
Q |
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|| | || || ||||| || |||| ||||||||| | || | |||||||||||| || |||| ||| | | ||||| || | || ||||| ||||| |
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| T |
11107656 |
ttgccaaaatatatggtcctttaatgagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaa |
11107557 |
T |
|
| Q |
297 |
tgaccagttcttgtctaatagaaccattccacaatctgtg |
336 |
Q |
| |
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|||| | |||||||| ||||| || |||||||||||||| |
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| T |
11107556 |
tgacaaattcttgtcaaataggactgttccacaatctgtg |
11107517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 336
Target Start/End: Complemental strand, 3195 - 2956
Alignment:
| Q |
97 |
acaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatc |
196 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || | |
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| T |
3195 |
acaaaaccaacctataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaac |
3096 |
T |
|
| Q |
197 |
ttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaa |
296 |
Q |
| |
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|| | || || ||||| || |||| ||||||||| | || | |||||||||||| || |||| ||| | | ||||| || | || ||||| ||||| |
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| T |
3095 |
ttgccaaaatatatggtcctttaatgagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaa |
2996 |
T |
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| Q |
297 |
tgaccagttcttgtctaatagaaccattccacaatctgtg |
336 |
Q |
| |
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|||| | |||||||| ||||| || |||||||||||||| |
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| T |
2995 |
tgacaaattcttgtcaaataggactgttccacaatctgtg |
2956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 29975458 - 29975376
Alignment:
| Q |
112 |
aagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaa |
194 |
Q |
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|||||||||||||||||| | |||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
29975458 |
aagcttccaccaggacctactcctcttcccttcataggaaacctccttcaattagggaaaaaacctcacaaatccttagccaa |
29975376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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