View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_low_11 (Length: 342)
Name: NF3038_low_11
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 53679605 - 53679476
Alignment:
| Q |
200 |
acctgcttaatcaacattgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
299 |
Q |
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| T |
53679605 |
acctgcttaatcaacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
53679506 |
T |
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| Q |
300 |
acatgcttaatcaactcccttcatgattct |
329 |
Q |
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| T |
53679505 |
acatgcttaatcaactcccttcatgattct |
53679476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 53679794 - 53679678
Alignment:
| Q |
11 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatcttcacatatttctacttttcatgaaatc |
110 |
Q |
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| T |
53679794 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaataccattcatttaacaatcttcacttatttctacttttcatgaaatc |
53679695 |
T |
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| Q |
111 |
atcattctcaatctccc |
127 |
Q |
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| T |
53679694 |
gtcattctcaatctccc |
53679678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 19266145 - 19266212
Alignment:
| Q |
15 |
ctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatc |
82 |
Q |
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| T |
19266145 |
ctgtgtgtacggatcttcttccttttcttctcttctctgtaaatccaaattccattcattcaacaatc |
19266212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 32375198 - 32375255
Alignment:
| Q |
20 |
tgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaa |
77 |
Q |
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| T |
32375198 |
tgtatggatcttcttccttttcttctcttctctgtaaatccaaatatcattcattcaa |
32375255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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