View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3038_low_12 (Length: 316)

Name: NF3038_low_12
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3038_low_12
NF3038_low_12
[»] chr7 (12 HSPs)
chr7 (1-153)||(36221990-36222137)
chr7 (1-153)||(36217999-36218146)
chr7 (218-299)||(36221845-36221926)
chr7 (1-147)||(35938863-35939004)
chr7 (1-127)||(32727103-32727224)
chr7 (1-144)||(35976980-35977118)
chr7 (1-144)||(35998392-35998530)
chr7 (219-299)||(36217854-36217934)
chr7 (3-127)||(35946319-35946438)
chr7 (15-147)||(35981560-35981687)
chr7 (15-147)||(36002972-36003099)
chr7 (1-144)||(35951956-35952094)
[»] chr1 (2 HSPs)
chr1 (1-144)||(18125245-18125383)
chr1 (1-68)||(18117592-18117659)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 36222137 - 36221990
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  36222137 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaaatcaaat 36222043  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaactccagcaca 153  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  36222042 tttgataacagagaacttcctaatgttttgacagccagcggaactccagcaca 36221990  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 36218146 - 36217999
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| |||| ||||||     || ||||||||||    
T  36218146 agcttaattttaaagcaggtaaaatatcatctttcttctgttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaatcaaat 36218052  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaactccagcaca 153  Q
    |||||||| |||||||||||||  ||| | |||||||||||||||||||||||    
T  36218051 tttgagaacagagaacttcctaccgttctcacagccagcggaactccagcaca 36217999  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 36221926 - 36221845
Alignment:
Q  218 aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatg 299  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  36221926 aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaaggaacagtactcatcatg 36221845  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 35938863 - 35939004
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    |||||||||||| ||||||||||||||||  || ||| |||||||| ||||| ||||||   |||||||| |||  ||||||     |||||||||||||    
T  35938863 agcttaattttagtgcaggtaaaatatcattttgcttctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaatcaaat 35938957  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaactcc 147  Q
    ||||| || |||||||||||||||||||| |||||||| ||||||||    
T  35938958 tttgaaaacagagaacttcctaatgttttcacagccagtggaactcc 35939004  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 32727103 - 32727224
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    ||||||| || |||||||||||||||||| ||||||| |||||||| ||||| ||||||   ||||| || |||||||||||     |||||||||| ||    
T  32727103 agcttaacttcaatgcaggtaaaatatcatctttcttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaatcatat 32727197  T
Q  101 tttgagaatagagaacttcctaatgtt 127  Q
    ||||||||||  ||||||| |||||||    
T  32727198 tttgagaataaggaacttcgtaatgtt 32727224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35976980 - 35977118
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    ||||||||||||  |||||||||||| || |||||||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| ||||||     
T  35976980 agcttaattttagcgcaggtaaaataccatctttcttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaag 35977074  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaac 144  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||    
T  35977075 tttgagaagagagaacttcctaatgttctcacagctagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35998392 - 35998530
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    ||||||||||||  |||||||||||| || |||||||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| ||||||     
T  35998392 agcttaattttagcgcaggtaaaataccatctttcttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaag 35998486  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaac 144  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||    
T  35998487 tttgagaagagagaacttcctaatgttctcacagctagcggaac 35998530  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 36217934 - 36217854
Alignment:
Q  219 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatg 299  Q
    ||||||||||||||||||| | ||||| |   ||||  ||||||||||||||||| ||||||||||||| |||||||||||    
T  36217934 aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatg 36217854  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 35946319 - 35946438
Alignment:
Q  3 cttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattt 102  Q
    ||||||||||  |||||||| |||||| |||||||||||||||| ||||| ||||||  ||| || ||||||  ||||||     | ||| |||||| ||    
T  35946319 cttaattttagcgcaggtaagatatcatctttcttttgttctaaattccacatctcagagtccctaacgaattcccactt-----acttatatcaaagtt 35946413  T
Q  103 tgagaatagagaacttcctaatgtt 127  Q
    |||||| ||||||||| ||||||||    
T  35946414 tgagaagagagaacttgctaatgtt 35946438  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 35981560 - 35981687
Alignment:
Q  15 gcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagaga 114  Q
    ||||||||||||||| ||||||| || ||||  ||||| | ||||   || ||||| |||| ||||||||||     |||||||  ||||| || || ||    
T  35981560 gcaggtaaaatatcatctttcttctgctctagattccataactcagaatcccttacaaatacccacttattt-----aaatcaagctttgaaaacaggga 35981654  T
Q  115 acttcctaatgttttgacagccagcggaactcc 147  Q
    ||||||||||||||||||||| || ||||||||    
T  35981655 acttcctaatgttttgacagctagtggaactcc 35981687  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 36002972 - 36003099
Alignment:
Q  15 gcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagaga 114  Q
    ||||||||||||||| ||||||| || ||||  ||||| | ||||   || ||||| |||| ||||||||||     |||||||  ||||| || || ||    
T  36002972 gcaggtaaaatatcatctttcttctgctctagattccataactcagaatcccttacaaatacccacttattt-----aaatcaagctttgaaaacaggga 36003066  T
Q  115 acttcctaatgttttgacagccagcggaactcc 147  Q
    ||||||||||||||||||||| || ||||||||    
T  36003067 acttcctaatgttttgacagctagtggaactcc 36003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35951956 - 35952094
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    |||||||||| |  ||||||||||||||| |||||| ||||||||| ||||||||  ||  |||||| || |||  ||||||     | ||||||| ||     
T  35951956 agcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaaatagcagagtctctgacaaattcccactt-----acttaaatcgaag 35952050  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaac 144  Q
    |||||||| || |||||||| |||| ||| |||||||| |||||    
T  35952051 tttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 18125245 - 18125383
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaat 100  Q
    |||| ||||||| |||||||||||||||| |||| |  |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||||||    
T  18125245 agctcaattttagtgcaggtaaaatatcatctttttgctgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatcaaat 18125339  T
Q  101 tttgagaatagagaacttcctaatgttttgacagccagcggaac 144  Q
    ||||||||||| ||||||||||||||| | ||||| || |||||    
T  18125340 tttgagaatagggaacttcctaatgttctaacagctagtggaac 18125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 18117592 - 18117659
Alignment:
Q  1 agcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctctt 68  Q
    |||||||||||| ||||||||||||||||  || ||||||||||||  |||| ||||||  |||||||    
T  18117592 agcttaattttagtgcaggtaaaatatcattttgcttttgttctaaagtccacatctcagagtctctt 18117659  T

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