View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_low_17 (Length: 256)
Name: NF3038_low_17
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 3132959 - 3132711
Alignment:
| Q |
7 |
tataactatgaaaccaaacatgatattgacacgtggacgtccataaaatttttagaaaatgaaagtaatctaatgatactataattcttgttaatgtcga |
106 |
Q |
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| T |
3132959 |
tataactatgaaaccaaacacgatattgacatgtagacgttcataaaatttttagaaaatgaaagtaatctaatgatactatagttcttgctagtgttga |
3132860 |
T |
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| Q |
107 |
actcgtgacacttgttcaatctgaagtgtcgatgctcgttgttataacatgaatttattctatttattattttctnnnnnnnnnttctaacttttacata |
206 |
Q |
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| T |
3132859 |
actcgtgacacttgttcaatctgaagtgtcggtgattgttgttataacatgaatttattcaatttattattttct-aaaaaaaattctaactcttacata |
3132761 |
T |
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| Q |
207 |
ttatcacgccatatatcgaatattaattgataagatgtacattcaaggta |
256 |
Q |
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| T |
3132760 |
ttatcacgccatatatcgaatattagccgataagatgtacattcaaggta |
3132711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 41568094 - 41568182
Alignment:
| Q |
55 |
tttttagaaaatgaaagtaatctaatgatactataattcttgttaatgtcgaactcgtgacacttgttcaatctgaagtgtcgatgctc |
143 |
Q |
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| T |
41568094 |
tttttagaaaatgaaactaatttaatgatactgtagtttttgttagtatccaactctaaacacttgttcaatttgaagtgtcggtgctc |
41568182 |
T |
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