View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3038_low_2 (Length: 507)

Name: NF3038_low_2
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3038_low_2
NF3038_low_2
[»] chr3 (6 HSPs)
chr3 (272-465)||(33757704-33757897)
chr3 (279-464)||(13179622-13179807)
chr3 (279-463)||(13184281-13184465)
chr3 (239-276)||(13180726-13180763)
chr3 (239-276)||(13185260-13185297)
chr3 (239-276)||(33758804-33758841)
[»] chr7 (5 HSPs)
chr7 (272-463)||(16157174-16157365)
chr7 (272-463)||(21368381-21368572)
chr7 (278-463)||(22707434-22707614)
chr7 (109-200)||(44356652-44356743)
chr7 (239-276)||(21369457-21369494)
[»] chr2 (3 HSPs)
chr2 (272-463)||(21465005-21465196)
chr2 (272-463)||(44794490-44794681)
chr2 (272-463)||(44794894-44795085)
[»] scaffold0003 (1 HSPs)
scaffold0003 (272-463)||(289110-289301)
[»] chr1 (2 HSPs)
chr1 (272-463)||(37260555-37260746)
chr1 (248-276)||(37259621-37259649)
[»] scaffold0359 (1 HSPs)
scaffold0359 (272-463)||(8503-8694)
[»] scaffold0065 (1 HSPs)
scaffold0065 (272-463)||(33516-33707)
[»] chr6 (4 HSPs)
chr6 (272-463)||(21299132-21299323)
chr6 (272-450)||(9344249-9344424)
chr6 (239-276)||(12638793-12638830)
chr6 (239-276)||(21302617-21302654)
[»] scaffold0671 (2 HSPs)
scaffold0671 (272-464)||(2272-2464)
scaffold0671 (248-276)||(1227-1255)
[»] chr8 (5 HSPs)
chr8 (272-464)||(16417291-16417483)
chr8 (272-464)||(17459592-17459784)
chr8 (272-463)||(18774040-18774231)
chr8 (109-200)||(20135328-20135419)
chr8 (239-276)||(18775140-18775177)
[»] chr4 (4 HSPs)
chr4 (272-459)||(11475790-11475977)
chr4 (291-463)||(34455906-34456079)
chr4 (239-276)||(34454924-34454961)
chr4 (239-276)||(11474846-11474883)
[»] chr5 (2 HSPs)
chr5 (272-463)||(22821033-22821224)
chr5 (239-276)||(22825867-22825904)
[»] scaffold0002 (1 HSPs)
scaffold0002 (279-464)||(127181-127366)
[»] scaffold0512 (1 HSPs)
scaffold0512 (239-276)||(4-41)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 272 - 465
Target Start/End: Complemental strand, 33757897 - 33757704
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  33757897 ttcaactcaaaccattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 33757798  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcacc 465  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33757797 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcacc 33757704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 279 - 464
Target Start/End: Complemental strand, 13179807 - 13179622
Alignment:
Q  279 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc 378  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  13179807 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct 13179708  T
Q  379 tttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac 464  Q
    ||||  ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  13179707 tttaattaaactttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcac 13179622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 279 - 463
Target Start/End: Complemental strand, 13184465 - 13184281
Alignment:
Q  279 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc 378  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  13184465 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct 13184366  T
Q  379 tttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    ||||  ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  13184365 tttaattaaactttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 13184281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 13180763 - 13180726
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13180763 agggcatggttgtccatgacacaagtgcttcaattcaa 13180726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 13185297 - 13185260
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13185297 agggcatggttgtccatgacacaagtgcttcaattcaa 13185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 33758841 - 33758804
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33758841 agggcatggttgtccatgacacaagtgcttcaattcaa 33758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 272 - 463
Target Start/End: Original strand, 16157174 - 16157365
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| | |||    
T  16157174 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcatttctttttggcacaccctttcattaacaatatttttagttcatttctagtgtt 16157273  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16157274 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 16157365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 21368572 - 21368381
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| || |||    
T  21368572 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcctgtgtt 21368473  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21368472 ttgtgcctttaattaatctttcagcaaacaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 21368381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 278 - 463
Target Start/End: Complemental strand, 22707614 - 22707434
Alignment:
Q  278 tcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgc 377  Q
    |||||||||| | ||||| |||||||||||||||||||  ||||||||||||||||| ||    |||||||||||| | | ||||||||| |||||||||    
T  22707614 tcaaatcattatcaaaattaatcccaatacataattttcttttccttttggcacatcatta---taacaatattttcattccatttcttgtgttttgtgc 22707518  T
Q  378 ctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    || || ||||||||| | |||||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||| |||||||    
T  22707517 ctata-ataatctttaatcaagcaacttttatcaattcataattaaaagtcaaatataaacaatttttac-aaatagtattcatca 22707434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 44356652 - 44356743
Alignment:
Q  109 atgaataaaccgtccaactcccttcacacacaacctgaaaaacacttcattccaagcatgaacggggactccgtaagctcacaaccaggccc 200  Q
    |||||||||||||||||| |  |||||||||| |||||| ||  | |||||||||||||| | ||| || |||||| ||| |||||| ||||    
T  44356652 atgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaacaccgtaaactcgcaaccaagccc 44356743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 21369494 - 21369457
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21369494 agggcatggttgtccatgacacaagtgcttcaattcaa 21369457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 21465196 - 21465005
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  21465196 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 21465097  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21465096 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 21465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 44794681 - 44794490
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  44794681 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 44794582  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44794581 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 44794490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 272 - 463
Target Start/End: Original strand, 44794894 - 44795085
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  44794894 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 44794993  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44794994 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 44795085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 272 - 463
Target Start/End: Original strand, 289110 - 289301
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  289110 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 289209  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  289210 ttgagcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 289301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 272 - 463
Target Start/End: Original strand, 37260555 - 37260746
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||||||| |||||||||||||||||||||||| |||    
T  37260555 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattgacaatatttttagttcatttcttgtgtt 37260654  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37260655 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 37260746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 276
Target Start/End: Original strand, 37259621 - 37259649
Alignment:
Q  248 ttgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||||||||||||||||||||||||    
T  37259621 ttgtccatgacacaagtgcttcaattcaa 37259649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 8694 - 8503
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  8694 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 8595  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  8594 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacgaaatagtgttcatca 8503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 33707 - 33516
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||  ||||||||| |||||||||  ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||    
T  33707 ttcaactcaaatcattgtcaaaaataatcccaatgcataattttcgtttccttttggcacaccctttcattaacaataattttagttcatttcttgtgtt 33608  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33607 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 33516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 21299323 - 21299132
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  21299323 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 21299224  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  21299223 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca 21299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 272 - 450
Target Start/End: Original strand, 9344249 - 9344424
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||  |||| |||||||||||| || |||||| |||||| || || ||||| ||  |||    
T  9344249 ttcaactcaaatcatcgtcaaaatcaatcctaatacataattttcgtttc-ttttggcacatcatt-cattaa-aatattatttgtccatttattttgtt 9344345  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaa 450  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9344346 ttgtgcctataattaatatttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaa 9344424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 12638793 - 12638830
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  12638793 agggcatggttgtccatgacacaagtgcttcaattcaa 12638830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 21302654 - 21302617
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21302654 agggcatggttgtccatgacacaagtgcttcaattcaa 21302617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 272 - 464
Target Start/End: Original strand, 2272 - 2464
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||  |||| |||||||||| | |||||||||||||||||||||||||||||||| |||    
T  2272 ttcaactcaaatcattgtcaaaattaatcccaatacatgattttcgtttctttttggcacaccttttcattaacaatatttttagttcatttcttgtgtt 2371  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac 464  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  2372 ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttctcaaaatagtgttcatcac 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 276
Target Start/End: Original strand, 1227 - 1255
Alignment:
Q  248 ttgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||||||||||||||||||||||||    
T  1227 ttgtccatgacacaagtgcttcaattcaa 1255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 272 - 464
Target Start/End: Complemental strand, 16417483 - 16417291
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  16417483 ttcaactcaaatcattgtcaaaattaatctcaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 16417384  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac 464  Q
    ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  16417383 ttgcgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcataaaatagtgttcatcac 16417291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 272 - 464
Target Start/End: Complemental strand, 17459784 - 17459592
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||| |||||||||  |||    
T  17459784 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaataattttagatcatttcttatgtt 17459685  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac 464  Q
    ||| | |||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17459684 ttgagactttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcac 17459592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 18774231 - 18774040
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  18774231 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 18774132  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||  ||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  18774131 ttgtgcctttaattaatctttctgcaagcaatttttatcaattcataattaaaagtcaaatatgatcaattttcacaaaatagtgttcatca 18774040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 20135419 - 20135328
Alignment:
Q  109 atgaataaaccgtccaactcccttcacacacaacctgaaaaacacttcattccaagcatgaacggggactccgtaagctcacaaccaggccc 200  Q
    |||||||||||||||||| |  |||||||||| |||||| ||  | |||||||||||||| | ||| || |||||| ||| |||||| ||||    
T  20135419 atgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaacaccgtaaactcgcaaccaagccc 20135328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 18775177 - 18775140
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  18775177 agggcatggttgtccatgacacaagtgcttcaattcaa 18775140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 272 - 459
Target Start/End: Original strand, 11475790 - 11475977
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||  |||    
T  11475790 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttaagtt 11475889  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttc 459  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11475890 ttgtgcctttaattaatctttcagcaatcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttc 11475977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 291 - 463
Target Start/End: Original strand, 34455906 - 34456079
Alignment:
Q  291 aaaataaatcccaatacataatttttat-ttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcctttatataatc 389  Q
    ||||| |||||||||| |||||||| || ||||||||| |||||| ||||||| |||||||||| |||  |||||||  ||||||||||| ||| |||||    
T  34455906 aaaattaatcccaatatataattttcatgttccttttg-cacatcatttcattcacaatattttcagtctatttcttatgttttgtgcctatatttaatc 34456004  T
Q  390 tttcagcaagcaac-ttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  34456005 tttcagcaagcaactttttaccaattcataattaaaagtcaaatatgaacaattttcacaaaacagtgttcatca 34456079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 34454924 - 34454961
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34454924 agggcataattgtccatgacacaagtgcttcaattcaa 34454961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 11474846 - 11474883
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  11474846 agggcatggttgtccatgacacaagtgcttcaattcaa 11474883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 272 - 463
Target Start/End: Complemental strand, 22821224 - 22821033
Alignment:
Q  272 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 371  Q
    |||||||||| ||||||  ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  22821224 ttcaactcaattcattgccaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 22821125  T
Q  372 ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca 463  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||    
T  22821124 ttgtacctttaattaatctttcagcaagcaacttttatcaattcataattataagtcaaatatgaacaattttcacaaaatagtgtttatca 22821033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 22825904 - 22825867
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  22825904 agggcatggttgtccatgacacaagtgcttcaattcaa 22825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 279 - 464
Target Start/End: Original strand, 127181 - 127366
Alignment:
Q  279 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc 378  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  127181 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct 127280  T
Q  379 tttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac 464  Q
    ||||  ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  127281 tttaattaaactttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcac 127366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 41 - 4
Alignment:
Q  239 agggcataattgtccatgacacaagtgcttcaattcaa 276  Q
    |||||||  |||||||||||||||||||||||||||||    
T  41 agggcatggttgtccatgacacaagtgcttcaattcaa 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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