View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3038_low_22 (Length: 239)
Name: NF3038_low_22
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 25680383 - 25680244
Alignment:
| Q |
16 |
ataaattataacatgattcaattgtaggctggcaagtcgaatattgtcaattaatcatattagattttaggatcggtctctttcaaaattatagatatat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25680383 |
ataaattataacatgattcaattgtaggctggcaagtcgaatattgtcaattaatcatattagattttaggatcggtctctttcaaaattatagatatat |
25680284 |
T |
|
| Q |
116 |
tttaaggcaattattgtgatgcataagtcatttattttgt |
155 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
25680283 |
tttaaggcaattattgtggtgcataagtaatttattttgt |
25680244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 25680229 - 25680131
Alignment:
| Q |
140 |
aagtcatttattttgtgcaaggtatatgttgaaatatttgtaaaggttaattctatggtgctcaagtaagacatgtctaattatattgtgtataagatac |
239 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| | | |||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
25680229 |
aagtaatttattttgtgcaaggtatacgtttta-tgtttgtaaaggttaattatatggtgcacaagtaagacatgtctagttacattgtgtataagatac |
25680131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University