View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3038_low_26 (Length: 227)

Name: NF3038_low_26
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3038_low_26
NF3038_low_26
[»] chr5 (5 HSPs)
chr5 (7-227)||(29646976-29647202)
chr5 (7-199)||(29598116-29598313)
chr5 (7-219)||(29641653-29641876)
chr5 (53-212)||(29821163-29821327)
chr5 (153-198)||(42297559-42297604)
[»] chr4 (2 HSPs)
chr4 (152-197)||(19356933-19356978)
chr4 (158-199)||(35766437-35766478)
[»] chr2 (1 HSPs)
chr2 (152-197)||(10205965-10206010)
[»] chr7 (2 HSPs)
chr7 (151-200)||(21219281-21219330)
chr7 (153-197)||(18515446-18515490)
[»] chr1 (1 HSPs)
chr1 (153-201)||(15960673-15960721)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 29646976 - 29647202
Alignment:
Q  7 cgaccttcaagaaagaaacacataacagtagttaaaaacgaaggacgttacaatgccgtaacttttcctttgagtcatttattggagaacccatcaaaaa 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29646976 cgaccttcaagaaagaaacacataacagtagttaaaaatgaaggacgttacaatgccgtaacttttcctttgagtcatttattggagaacccataaaaaa 29647075  T
Q  107 ctatagccagcaactcttattaccgat-----tacagggattgtagtc-gagttgtcggttcatgcaatggattgctttgtttgctcggttattcttaca 200  Q
    |||||||||||||||||||||||||||     || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29647076 ctatagccagcaactcttattaccgattggagtatagggattgtagtctgagttgtcggttcatgcaatagattgctttgtttgctcggttattcttaca 29647175  T
Q  201 caagtaatcatattcaggagaaaacaa 227  Q
    ||||||||||||||||| |||||||||    
T  29647176 caagtaatcatattcagaagaaaacaa 29647202  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 29598313 - 29598116
Alignment:
Q  7 cgaccttcaagaaagaaacacataacagtagttaaaaacgaaggacgttacaatgccgtaacttttcctttgagtcatttattggagaacccatcaaaaa 106  Q
    |||||||| ||||||||||||||| ||||| |  |||  |||| | |||||||||  |||||||||||||||| |||||||||||||||||| ||   ||    
T  29598313 cgaccttccagaaagaaacacatagcagtaatcgaaacagaagcaggttacaatgtggtaacttttcctttgaatcatttattggagaacccgtcggtaa 29598214  T
Q  107 ctatagccagcaactcttattaccgatt-----acagggattgtagtcgagttgtcggttcatgcaatggattgctttgtttgctcggttattcttac 199  Q
    | || |||| ||||||||| ||||||||     ||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  29598213 ccatcgccaccaactcttactaccgattggagtacaaggattgtagccgagttgttggttcatgcaatggattgctttgtttgcttggttattcttac 29598116  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 29641653 - 29641876
Alignment:
Q  7 cgaccttcaagaaagaaacacataacagtagttaaaaacgaaggacgttacaatgccgtaact------tttcctttgagtcatttattggagaacccat 100  Q
    |||||||||||||||||||||||| ||||| | ||| | |||| | |||||| ||| | ||||      |||||||||| ||||| ||||||||||||||    
T  29641653 cgaccttcaagaaagaaacacatagcagtaatcaaatatgaagcaggttacattgcggaaactaaaaattttcctttgaatcattcattggagaacccat 29641752  T
Q  101 caaaaactatagccagcaactcttattaccgatt-----acagggattgtagtcgagttgtcggttcatgcaatggattgctttgtttgctcggttattc 195  Q
    ||  ||  || || ||||||||||| ||||||||     ||| ||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  29641753 cagtaagcatcgctagcaactcttactaccgattggagtacaaggattgtatccgagttgttggttcatgcaatggattgctttgtttgcttggttattc 29641852  T
Q  196 ttacacaagtaatcatattcagga 219  Q
    |||| |||||||||||| ||||||    
T  29641853 ttactcaagtaatcataatcagga 29641876  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 29821327 - 29821163
Alignment:
Q  53 gttacaatgccgtaacttttcctttgagtcatttattggagaacccatcaaaaactatagccagcaactcttattaccgatta-----cagggattgtag 147  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||  ||  |||  | |||||||||||||| |||| |||      ||||||  || |    
T  29821327 gttacaatgcggtaacttttcccttgagtcatttattggagaaaccggcactaaccctcgccagcaactcttactaccaattggagtgcagggaacgtgg 29821228  T
Q  148 tcgagttgtcggttcatgcaatggattgctttgtttgctcggttattcttacacaagtaatcata 212  Q
     ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29821227 ccgatttgttggttcatgcaatggattgctttgtttgctcagttattcttacacaagtaatcata 29821163  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 42297559 - 42297604
Alignment:
Q  153 ttgtcggttcatgcaatggattgctttgtttgctcggttattctta 198  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  42297559 ttgttggttcatgcaatggattgatttgtttgctcggttattctta 42297604  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 19356933 - 19356978
Alignment:
Q  152 gttgtcggttcatgcaatggattgctttgtttgctcggttattctt 197  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  19356933 gttgttggttcttgcaatggattgctttgtttgcttggttattctt 19356978  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 35766437 - 35766478
Alignment:
Q  158 ggttcatgcaatggattgctttgtttgctcggttattcttac 199  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  35766437 ggttcatgcaatggatggctttgtttgcttggttattcttac 35766478  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 10206010 - 10205965
Alignment:
Q  152 gttgtcggttcatgcaatggattgctttgtttgctcggttattctt 197  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||    
T  10206010 gttgtcggttcctgcaatggattgctatgtttgctcggtcattctt 10205965  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 21219330 - 21219281
Alignment:
Q  151 agttgtcggttcatgcaatggattgctttgtttgctcggttattcttaca 200  Q
    |||||| ||||| |||||||||||| | ||||||| ||||||||||||||    
T  21219330 agttgttggttcctgcaatggattggtctgtttgcgcggttattcttaca 21219281  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 18515490 - 18515446
Alignment:
Q  153 ttgtcggttcatgcaatggattgctttgtttgctcggttattctt 197  Q
    |||| |||||||||||||||||| | ||||||||||||| |||||    
T  18515490 ttgttggttcatgcaatggattggtctgtttgctcggttgttctt 18515446  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 15960673 - 15960721
Alignment:
Q  153 ttgtcggttcatgcaatggattgctttgtttgctcggttattcttacac 201  Q
    |||| ||||| ||||||||||||||||| ||||||||  ||||||||||    
T  15960673 ttgttggttcttgcaatggattgctttgcttgctcggccattcttacac 15960721  T

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