View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3038_low_3 (Length: 460)

Name: NF3038_low_3
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3038_low_3
NF3038_low_3
[»] chr4 (9 HSPs)
chr4 (16-451)||(29676346-29676782)
chr4 (147-364)||(35968306-35968523)
chr4 (152-420)||(36636764-36637032)
chr4 (270-364)||(35974134-35974228)
chr4 (157-285)||(38863107-38863235)
chr4 (201-334)||(36668513-36668646)
chr4 (282-338)||(36607460-36607516)
chr4 (152-315)||(36909544-36909707)
chr4 (282-420)||(36643459-36643597)
[»] chr5 (2 HSPs)
chr5 (147-364)||(19658216-19658433)
chr5 (147-364)||(19675055-19675272)
[»] chr1 (1 HSPs)
chr1 (152-364)||(42602757-42602969)
[»] chr8 (1 HSPs)
chr8 (119-255)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (157-233)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (162-215)||(43864074-43864127)
chr2 (162-215)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (177-209)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (147-207)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 29676346 - 29676782
Alignment:
Q  16 tttccctttgcctttataattgctcattttcttttcttgaattcttgttctagaaaagatgaagaaactaaggcactgtgaggaagaaaacaaagaaggt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676346 tttccctttgcctttataattgctcattttcttttcttgaattcttgttctagaaaagatgaagaaactaaggcactgtgaggaagaaaacaaagaaggt 29676445  T
Q  116 gaagacaggctaagcaacttatcggattgccttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagat 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676446 gaagacaggctaagcgacttatcggattgccttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagat 29676545  T
Q  216 atgaacatctctggaaacatatcccaactcttattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29676546 atgaacatctctggaaacatatcccaactcttattttgcaagcttcaacatttgccactcttaaacaattttccaaattcgtctctaaaattttgactct 29676645  T
Q  316 tcgtgatacctcgactgcactgctagctcttgatcttcaccgtcctggtttgatagaaccgtatctccttaaaaagattttaaaatatgttcgctcctat 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29676646 tcgtgatacctcgactgcactgctagctcttgatcttcaccgtcctggtttgatagaaccgtatctccttaaaaagattttaaaatatgttcgctcatat 29676745  T
Q  416 -aatactcttgaattaggaatctctgtgtgtgatgat 451  Q
        |||||||||||||||||||||||||||| ||||    
T  29676746 cccaactcttgaattaggaatctctgtgtgtgctgat 29676782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 147 - 364
Target Start/End: Original strand, 35968306 - 35968523
Alignment:
Q  147 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactct 246  Q
    |||| |||| ||||||||| || ||| || | ||||| ||||||||||||||| |||||||||| ||||  |||||||||||||||| |||  |||||||    
T  35968306 ttctccttcacattttgtcattattggatacaaaacaggtcgttcaaacttgcgttttgtccaaaagatgggaacatctctggaaacgtatttcaactct 35968405  T
Q  247 tattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctctt 346  Q
    ||| ||| | |||||||  ||| ||||||  || |||||| |||  ||||| ||||| ||||||||||||||||||||||| | | |||||| |||||||    
T  35968406 tatgttgtatgcttcaagtttttccactccgaagcaatttgccatgttcgtgtctaagattttgactcttcgtgatacctcaattccactgcaagctctt 35968505  T
Q  347 gatcttcaccgtcctggt 364  Q
    ||| || |||||| ||||    
T  35968506 gatattgaccgtcatggt 35968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 152 - 420
Target Start/End: Complemental strand, 36637032 - 36636764
Alignment:
Q  152 cttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattt 251  Q
    |||| ||||||||| ||||||||| ||||||| || ||   ||||||  ||||||| |||||||    |||||||||||||| ||| ||||||||||| |    
T  36637032 cttcacattttgtcatttttgaataccaaacatgttgtcagaacttgtgttttgtctaagagatggagacatctctggaaacgtattccaactcttatgt 36636933  T
Q  252 tgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatct 351  Q
    || | || |||| |||| ||||| |||| |||||| |||  || || ||||| || |||||||||||||||||||| ||||||||||  |||||||||||    
T  36636932 tgtatgcatcaagattttccactgttaagcaatttgccatgtttgtgtctaacatattgactcttcgtgatacctcaactgcactgcacgctcttgatct 36636833  T
Q  352 tcaccgtcctggtttgatagaaccgtatctccttaaaaagattttaaaatatgttcgctcctataatac 420  Q
    | |||||| ||||   || || ||  | |||||||||||||||||||| ||||||  |||| |||||||    
T  36636832 tgaccgtcatggtaacattgagcctcaactccttaaaaagattttaaactatgtttcctcccataatac 36636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 35974134 - 35974228
Alignment:
Q  270 ccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatcttcaccgtcctggt 364  Q
    |||||| ||| |||||| ||| |||||| | ||| ||||||||||||||||||||||| | |||||||| |||| ||||| || |||||| ||||    
T  35974134 ccactcgtaagcaatttgccatattcgtgtataagattttgactcttcgtgatacctcaattgcactgcaagctattgatattaaccgtcatggt 35974228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 38863235 - 38863107
Alignment:
Q  157 cattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattttgcaa 256  Q
    ||||||||| |  |||||| ||||||| | | ||| ||||||  |||||||||||||||   ||||||||| ||||| ||| ||| ||||||| |||||     
T  38863235 cattttgtcatcgttgaataccaaacatgccattcgaacttgtgttttgtccaagagatggaaacatctctcgaaacgtattccatctcttatattgcat 38863136  T
Q  257 gcttcaacatttcccactcttaaacaatt 285  Q
     |||||| |||| ||||| ||||||||||    
T  38863135 tcttcaagattttccactgttaaacaatt 38863107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 334
Target Start/End: Complemental strand, 36668646 - 36668513
Alignment:
Q  201 ttttgtccaagagatatgaacatctctggaaacatatcccaactcttattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctc 300  Q
    ||||||| |||||||  |||||||||||||||| |||  |||| ||||| |||||  |||| | |||| ||  | |||| |||||| | | ||| || ||    
T  36668646 ttttgtcaaagagatgggaacatctctggaaacgtatttcaacccttatattgcattcttctagattttcctatgttaagcaatttacaacatttgtgtc 36668547  T
Q  301 taaaattttgactcttcgtgatacctcgactgca 334  Q
    ||| ||||||||||||||||||| ||| ||||||    
T  36668546 taagattttgactcttcgtgatagctcaactgca 36668513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 36607516 - 36607460
Alignment:
Q  282 aattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgc 338  Q
    ||||| |||||||||| || || ||||||||||||||||||||||| | ||||||||    
T  36607516 aatttaccaaattcgtgtcaaatattttgactcttcgtgatacctcaattgcactgc 36607460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 315
Target Start/End: Original strand, 36909544 - 36909707
Alignment:
Q  152 cttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattt 251  Q
    |||| |||||| || || |||||| ||||||| | |||   ||||||  |||| ||||||||||  | |||||||||||| |  || ||||||||||| |    
T  36909544 cttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatggggacatctctggaagcgaattccaactcttatgt 36909643  T
Q  252 tgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactct 315  Q
    | ||  |||||| |||| ||||| |||| |||||| | | |||||| ||||| |||||||||||    
T  36909644 tacattcttcaagattttccactattaagcaatttacaacattcgtgtctaagattttgactct 36909707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 420
Target Start/End: Complemental strand, 36643597 - 36643459
Alignment:
Q  282 aattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatcttcaccgtcctggtttgatagaaccgtatct 381  Q
    ||||| ||| |||||| ||||| ||||||||||||||  ||| ||| ||| | |||| ||||||  ||||| | |||| ||||   || |||||  | ||    
T  36643597 aatttgccatattcgtgtctaacattttgactcttcgcaatagctcaacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaact 36643498  T
Q  382 ccttaaaaagattttaaaatatgttcgctcctataatac 420  Q
    |||||||||||||||||| ||| || ||||| |||||||    
T  36643497 ccttaaaaagattttaaattatatttgctcccataatac 36643459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 19658433 - 19658216
Alignment:
Q  147 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactct 246  Q
    |||| |||| ||||||||| |||||| | || ||| | | ||||||||||||  ||||||||| |||||      |||||||||||| ||| ||||||||    
T  19658433 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19658334  T
Q  247 tattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctctt 346  Q
    |||||||||  |||| | |||| ||||||| || |||||||||||||||||  |||| ||||||||||||||||||||||| | | || |||  || |||    
T  19658333 tattttgcattcttccaaattttccactctgaagcaattttccaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgccctt 19658234  T
Q  347 gatcttcaccgtcctggt 364  Q
    |||||| |||||| ||||    
T  19658233 gatcttgaccgtcatggt 19658216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 19675272 - 19675055
Alignment:
Q  147 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactct 246  Q
    |||| |||| ||||||||| |||||| | || ||| | | ||||||||||||  ||||||||| |||||      |||||||||||| ||| ||||||||    
T  19675272 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19675173  T
Q  247 tattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctctt 346  Q
    |||||||||  |||| | |||| ||||||| || |||||||| ||||||||  |||| ||||||||||||||||||||||| | | || |||  || |||    
T  19675172 tattttgcattcttccaaattttccactctgaagcaattttcgaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgccctt 19675073  T
Q  347 gatcttcaccgtcctggt 364  Q
    |||||| |||||| ||||    
T  19675072 gatcttgaccgtcatggt 19675055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 42602969 - 42602757
Alignment:
Q  152 cttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattt 251  Q
    |||| ||||||||| ||| | ||  ||||||||  ||||||||||||||| |||||||| ||||   | | | | ||||||| ||| || |||||||| |    
T  42602969 cttcacattttgtcatttcttaactccaaacacaccgttcaaacttgcatcttgtccaaaagatggaagcttatgtggaaacgtattcctactcttatat 42602870  T
Q  252 tgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatct 351  Q
    || |  | ||||  ||||||||| | || || ||||||| ||| || ||||| ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  42602869 tggattcctcaaactttcccactgtgaagcatttttccatatttgtgtctaagattttgactcttcgtgatacctcaactgcactgcatgctcttgatct 42602770  T
Q  352 tcaccgtcctggt 364  Q
    |||||||| ||||    
T  42602769 tcaccgtcatggt 42602757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 35335816 - 35335952
Alignment:
Q  119 gacaggctaagcaacttatcggattgccttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatg 218  Q
    |||||| ||||  ||||| | |||||| ||||||||| ||||||||| || ||  || ||||||| || |||||||||||| |||||||||| ||||       
T  35335816 gacaggataagtgacttacctgattgcattctacttcacattttgtcattattacattccaaacaagttgttcaaacttgcgttttgtccaaaagatgga 35335915  T
Q  219 aacatctctggaaacatatcccaactcttattttgca 255  Q
    ||||||| ||||||| ||| ||||| ||||| |||||    
T  35335916 aacatctatggaaacgtattccaacacttatattgca 35335952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 33844363 - 33844287
Alignment:
Q  157 cattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaac 233  Q
    ||||||||| ||||||||  || || ||| |||||||||||||||||||||||  ||||   |||||||||||||||    
T  33844363 cattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctctggaaac 33844287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 43864127 - 43864074
Alignment:
Q  162 tgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagat 215  Q
    |||| ||||||||||| ||| | | |||||||||||||||||||||||| ||||    
T  43864127 tgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagat 43864074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 43875294 - 43875241
Alignment:
Q  162 tgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagat 215  Q
    |||| ||||| ||||| ||| | |||||||||||||||||||||||||| ||||    
T  43875294 tgtcctttttaaatgcaaaagaggtcgttcaaacttgcattttgtccaaaagat 43875241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 32413649 - 32413681
Alignment:
Q  177 ccaaacacgtcgttcaaacttgcattttgtcca 209  Q
    ||||||||| |||||||||||||||||||||||    
T  32413649 ccaaacacgccgttcaaacttgcattttgtcca 32413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 25596897 - 25596957
Alignment:
Q  147 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtc 207  Q
    |||| |||| ||||||||| ||||||||| ||||  | | |||||||||||||||||||||    
T  25596897 ttcttcttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtc 25596957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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