View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3038_low_6 (Length: 425)
Name: NF3038_low_6
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 41675294 - 41674916
Alignment:
| Q |
18 |
aaacctacctcacatacaaacatatacttaaa-gagcaggagaaaacattaacataataaaaacttggctattgaataggggaattgaataagcctagca |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41675294 |
aaacctacctcacatacaaacatacacttaaaagagcaggagaaaacattaacataataaaa-cttggatattgaataggggaattgaataagcctagca |
41675196 |
T |
|
| Q |
117 |
aaagaatttgaagtagaagatggtaataatgcatacgaagatagtaagaatttagaaaatagggaatgaaaaggaaaggaatagataccagaggcagagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675195 |
aaagaatttgaagtagaagatggtaataatgcatatgaagatagtaagaatttagaaaatagggaatgaaaaggaaaggaatagataccagaggcagagg |
41675096 |
T |
|
| Q |
217 |
cagaggcattgtgaggagtcaagcgaaaggcaacaagagaaccaaaatcgtcaatctctctagataataaacgtccctcatcttcttcttcatcttgatg |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
41675095 |
cagaggcagagtgaggagtcaagcgaaaggaaacaagagaaccaaaatcgtcaatctctctggataataaacgtccctcatct---tcttgatcttgatg |
41674999 |
T |
|
| Q |
317 |
acggagctgttgggtttcgtcttcgaaggaaataggtccgtcttgtgaagcaccggaaatagagcgtaaggtagcatttttga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
41674998 |
acggagctgttgggtttcgtcttcgaaggaaataggtccgtcttgtgaagaaacggaaatagagcgtaaggtagcatttttga |
41674916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University