View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3038_low_7 (Length: 416)
Name: NF3038_low_7
Description: NF3038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3038_low_7 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 167 - 289
Target Start/End: Original strand, 13485798 - 13485920
Alignment:
| Q |
167 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcacaaactcaacacattgtttgacagaagttttaaa |
266 |
Q |
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| T |
13485798 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcataaactcaacacattgtttgacagaggttttaaa |
13485897 |
T |
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| Q |
267 |
aacaagatcaatattaggttcaa |
289 |
Q |
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| T |
13485898 |
aacaagatcaatattaggttcaa |
13485920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 13485612 - 13485746
Alignment:
| Q |
11 |
gagcacagacacatcaacaacatttccaaaagaaagttcaaagataatatctaattggacatgggatggtccaacatcattaggggcggtttcttttgtt |
110 |
Q |
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| T |
13485612 |
gagcacagacacatcaacaacattttcaaaagaaagttcaaagataatatctaattggacatgggatggtccaaaatcattagcggcggtttcttttgtt |
13485711 |
T |
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| Q |
111 |
gatttatttggtctcagttgatgtttcagaaacaaga |
147 |
Q |
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| T |
13485712 |
gatttatttgg--tcagttgatgtttcagaaacaaga |
13485746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 13485944 - 13486055
Alignment:
| Q |
283 |
ggttcaacatgcaataactggagcaataattgaagtttcagtaacatcataannnnnnnatccacataatcaaaatggtttgtgggaacattgaccggta |
382 |
Q |
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| T |
13485944 |
ggttcaacatgcaataactggagcaataattgaagtttcagtaacatcataatttttttatccacataatcaaaatggtttgtgggaacattggccggta |
13486043 |
T |
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| Q |
383 |
cggatgaagcat |
394 |
Q |
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| T |
13486044 |
cggatgaagcat |
13486055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 36392 - 36266
Alignment:
| Q |
167 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcacaaactcaacacattgtttgacagaagttttaaa |
266 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||| ||||| | |||||||||||||| | | |||||||| |||| |||| ||||| ||| |
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| T |
36392 |
caacaaaaatatcaggtgtactagatgttttaacaaccttatcagagacatgatctacttgactcgtataatcaacacagggtttcacaggagtttcaaa |
36293 |
T |
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| Q |
267 |
aacaagatcaatattaggttcaacatg |
293 |
Q |
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|||||||| | |||| |||||||||| |
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| T |
36292 |
cacaagatcgacattaagttcaacatg |
36266 |
T |
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